1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaacaagaacaattcaatttcattaattcctaaaagcttttaaagagttgttactaatttaaatactctgtttttgttattgtgttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATACCGCCAGAGAGGATACCAAAGTACCAGCTCGTGTACAAGGATGTGTAGA
species | Arabidopsis thaliana |
transcript | AT3G24730.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG GCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAGTGTCCAATAEST: gi|86025278|gb|DR321031.1|DR321031
genomic: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGgtaacaagaa ... ttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATA
EST: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG GCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATAEST: gi|86025276|gb|DR321029.1|DR321029
genomic: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGgtaacaagaa ... ttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATA
EST: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG GCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAGTGTCCAATAEST: gi|86076496|gb|DR372253.1|DR372253
genomic: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGgtaacaagaa ... ttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATA
EST: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG GCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATAEST: gi|164100725|gb|ES047250.1|ES047250
genomic: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGgtaacaagaa ... ttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATA
EST: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG GCCATATATCGAGGAGCAATGAAAGGGAAGATGEST: gi|86025279|gb|DR321032.1|DR321032
genomic: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGgtaacaagaa ... ttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATG
EST: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG GCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAGTGTCCAATAEST: gi|86025282|gb|DR321035.1|DR321035
genomic: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGgtaacaagaa ... ttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATA
EST: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG GCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAGTGTCCAATAEST: gi|86025281|gb|DR321034.1|DR321034
genomic: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGgtaacaagaa ... ttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATA
EST: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG GCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAGTGTCCAATAEST: gi|86025274|gb|DR321027.1|DR321027
genomic: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGgtaacaagaa ... ttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATA
EST: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAG GCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAGTGTCCAATA
genomic: AATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGgtaacaagaa ... ttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATA
ttaaagagttgttactaatttaaatactctgtttttgttattgtgttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATACCGCCAGAGAGGATACCAAAGTACCAGCTCGTGTACAAGGATGTGTAGA
tactaat putative branch site (score: 1)
taatttaaatactctg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaagaacaattcaatttcattaattcctaaaagcttttaaagagttgttactaatttaaatactctgtttttgttattgtgttatgtatagGCTATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATACCGCCAGAGAGGATACCAAAGTACCAGCTCGTGTACAAGGATGTGTAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG