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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcttattgttgaaaatggcatcagtatcatatatttagattatagactatggttttcttgaaaacaaagatccatgttttatgcagCGCAGTGCTCGCGCATTTTATTTTGAAAGAGAAATTGCATATGTTTGGGATACTTGGTTGCATTCTCTGTGTTGTTGGGTCTACAACTATAGTCTTACAC

Basic information

species Arabidopsis thaliana
transcript AT3G23870.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G23870.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os04g30450.1 (Oryza sativa), 3'ss of exon 3
---gtattcttattgttgaaaatggcatcagtatcatatatttagattatagactatggttttcttgaaaacaaagatccatgttttatgcagCGCAGTGCTCGCGCATTTTATTTTGAAAGAGAAATTGCATATGTTTGGGATACTTGGTTGCATTCTCTGTGTTGTTGGGTCTACAACTATAGTCTTACAC
    ||  | |||  |||    | | |  | ||   | |  |||     |||  | | |||| ||| | |       ||  |  || || ||| |||||||| || || ||||||||||| ||||  |||||||||||||| ||  ||||||||||  | || |||||||| ||      ||||||  |||| 
gttttacacatatctttgcgtctagga--aataattt-tgattaatcagtagtatgttgtttccttaacac------tcttttattcattcagTGCAGTGCTAGCACACTTTATTTTGAAGGAGAGGTTGCATATGTTTGGTATTGTTGGTTGCATATTATGCGTTGTTGGTTCAGTTGGTATAGTTCTACAT

upper sequence: AT3G23870.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G092991_T03 (Zea mays), 3'ss of exon 3
gtattcttattgttgaaaatggcatcagtatcatatatttagat-tatagactatggttttcttgaaaacaaagatccatgttttatgcagCGCAGTGCTCGCGCATTTTATTTTGAAAGAGAAATTGCATATGTTTGGGATACTTGGTTGCATTCTCTGTGTTGTTGGGTCTACAACTATAGTCTTACAC
               | |     |     ||| || ||||   |  |   | | | |  ||| ||   |     ||   |   | |||||| ||||||||||| || || ||| ||||||| || ||||| ||||||||  |  |||||||||| || ||||||||||| |||     |||||| || || 
-------------gtagagctttactgtcatcgtagatttccttgcacctagtgttgcgttcctgttta-----atgttttgctcatgcagTGCAGTGCTCGCACACTTCATTCTGAAAGAAAATTTGCACATGTTTGGCGTTGTTGGTTGCATACTATGTGTTGTTGGTTCTGTTGGTATAGTTTTGCAT

upper sequence: AT3G23870.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G092991_T04 (Zea mays), 3'ss of exon 4
gtattcttattgttgaaaatggcatcagtatcatatatttagat-tatagactatggttttcttgaaaacaaagatccatgttttatgcagCGCAGTGCTCGCGCATTTTATTTTGAAAGAGAAATTGCATATGTTTGGGATACTTGGTTGCATTCTCTGTGTTGTTGGGTCTACAACTATAGTCTTACAC-----
               | |     |     ||| || ||||   |  |   | | | |  ||| ||   |     ||   |   | |||||| ||||||||||| || || ||| ||||||| || ||||| ||||||||  |  |||||||||| || ||||||||||| |||     |||||| || ||      
-------------gtagagctttactgtcatcgtagatttccttgcacctagtgttgcgttcctgttta-----atgttttgctcatgcagtgcagTGCTCGCACACTTCATTCTGAAAGAAAATTTGCACATGTTTGGCGTTGTTGGTTGCATACTATGTGTTGTTGGTTCTGTTGGTATAGTTTTGCATGCCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttagattatagactatggttttcttgaaaacaaagatccatgttttatgcagCGCAGTGCTCGCGCATTTTATTTTGAAAGAGAAATTGCATATGTTTGGGATACTTGGTTGCATTCTCTGTGTTGTTGGGTCTACAACTATAGTCTTACAC
                                          atgttttat  TA-rich tract