ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
PPT, BS, UA-tract

Sequence

atgc intronic sequence ATGC exonic sequence

gtgcatagaacatagatcagttcattataccggatttgtaacttggtaatttgcttacattgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG

Basic information

species	Arabidopsis thaliana
transcript	AT3G23390.1
intron #	3
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os07g33921.1 (Oryza sativa), 3'ss of exon 3

----------gtgcatagaacatagatc--agttcattat-accggatttgtaacttggta-atttgctta-cattgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATT----TTCTGCGATTTTTGTACTTGCTG
           |    |  ||  |      |  |  | || |    ||  ||| |||  || || || |      | | ||   || || ||  || ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| || |||  |   | |    || |    || || |  | |||| |||    
gtattatttcattgtcaagactcaagctgaaaattgtcatgaatcaatcagtatctttttagatgtgttgggtgctatcttacattattattctttacagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAACTACCTACTGGATACTGAAGTTGTGGGTCTATTGTGCTT----

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os07g33979.1 (Oryza sativa), 3'ss of exon 3

-----------gtgcatagaacatagatcagttcattataccggatttgtaacttggta-atttgctt-acattgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG
            ||   |||    ||| | |   |||||   | ||   ||  ||| |  || || |  |   |   |||  |  |||||   | ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| || |||                                        
gtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattttgctggatgtgttggatgctcacttgcataattgttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAA----------------------------------------

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3

-----------gtgcatagaacatagatcagttcattataccggatttgtaacttggta-atttgctt-acattgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGT--ACTTGCTG
            ||   |||    ||| | |   |||||   | ||   ||  ||| |  || || |  |   |   |||  |  |||||   | ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| || ||| ||| || |  | || |   | | ||  ||||     | |  
gtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattttgctggatgtgttggatgctcacttgcataattgttctctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACCTACTGGATACTATAGTTGTTGGTCTAC--

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os07g33860.1 (Oryza sativa), 3'ss of exon 3

---------gtgcatagaacatagatcagttcattataccggatttgtaacttggta-atttgctt-acattgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATT----TTCTGCGATTTTTGTACTTGCTG
              |  |   |  | | |   ||| |   | ||  ||| |||  || || || |  |   |   ||   |  || ||   | ||||||||||||||||| || || ||||| ||||||||||| |||||||| ||||| || |||  |   | |    || |    || || |  |  ||| |||    
gtatttttgcaatgtgaagattcaagctgaaaattctcatgaatcagtatctttttagatgtgttggatgctcacttacataattattctgtgcagAGGTGCAAGCATTTTGAAATTGGTGGAGACAAGAAGGGCAAGGGAACGTCTCTTTTCTAAACTACCTACTGGATACTGAAGTTGTGGGTCTACTGTGCTT----

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os07g26740.1 (Oryza sativa), 3'ss of exon 3

----------gtgcatagaacatagatcagttcattataccggatttgtaac-----ttggtaatttgcttacat-tgtgttggtttgttg----tttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG
           ||| |  | | |   |   ||  |  | |      ||| |      | |||  |||     ||| ||    |  ||||||     | | |||||||||||||||| || || |||||||| ||||||||||| |||||||| || || || |||| || |   ||     | |   | | || | | |  |  |
gtctttatcaatgctttcagcttctttttttttttcctcctcatcatgttatagcattcggttttttagaagcatctgacccgtcttgttgcaatctgacttcagAGGTGCAAGCACTTTGAAATCGGTGGAGACAAGAAGGGCAAGGGAACTTCACTCTTCTAAGATGCTGATATTGCCCTGTTCCCCAATTCTCTGCCAGGAG

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os07g33915.1 (Oryza sativa), 3'ss of exon 2

---------gtgcatagaacatagatcagttcattataccggatttgtaacttggta-atttgctt-acattgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG
              |  |   |  | | |   ||| |   | ||  ||| |||  || || || |  |   |   ||   |  || ||   | |||||||||||||||||  | || ||||| ||||||||||| |||||||| ||||| || |||                                        
gtatttttgcaatgtgaagattcaagctgaaaattctcatgaatcagtatctttttagatgtgttggatgctcacttacataattattctgtgcagAGGTGCAAGCATTTTAAAATTGGTGGAGACAAGAAGGGCAAGGGAACGTCTCTTTTCTAA----------------------------------------

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G160351_T01 (Zea mays), 3'ss of exon 3

gtgcata-gaacatagatcagttcattataccgg-atttgtaacttggtaatttgcttacattgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG-
||   || |  |||   ||| |   || | ||    |||||   |||    ||   | |   |   || ||   ||    | |||||||||||||||| || |||||||||||||||||||| || |||||||| |||||||| ||||    |   |   | |  || | |  |   |||  ||    
gtctttacggccatgcttcattattttgtgccctcgtttgtgttttg----ttctttgaagctaactttgtccttta---acttcagAGGTGCAAGCACTTTGAGATCGGTGGTGACAAGAAAGGCAAGGGAACCTCTCTGTTCTAAGCGTATCATAAACT-TGCTCAGGGTCTCAAGTATCTGTCAG

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3

------------gtgcatagaacatagatcagttcattataccggat-ttgtaacttggtaattt-gcttacattgtgttggtttgtt---gtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATT--TTTGTACTTGCTG
             |          |||    | |  ||  ||    | ||||  |    | |||| ||| ||  | |  ||  |   |    | | |  ||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||| || ||||||  | |||||     |   |   ||   | | || ||  |
gtgcagtgtctcattttcctgtgttaggcttgct-gttgcacaaagtattgtctcactttgatttagctcactctttcctgactgactcacctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTT--TCTCATCGCCCATCTCGATGTTGGATCGAACCTGTGG

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G160351_T03 (Zea mays), 3'ss of exon 2

gtgcatagaacatagatcagttcattataccg--gatttgtaacttggtaat-ttgcttacattgtgtt-----------ggtttgttgttta-tttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG
   |  |  ||       || || |||   |   | ||  | | || ||    | | ||   || ||||             |||||  ||||  |||||||||||||||| || |||||||||||||||||||| || |||||||| |||||||| |||                                        
actctcaacacccgatcaaggtctttacggccatgcttcattattttgtgccctcgtttgtgttttgttctttgaagctaactttgtcctttaacttcagAGGTGCAAGCACTTTGAGATCGGTGGTGACAAGAAAGGCAAGGGAACCTCTCTGTTCTAA----------------------------------------

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G125527_T02 (Zea mays), 3'ss of exon 3

------------gtgcatagaacatagatcagttcattataccggatttgtaacttggtaatttgcttacattgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG--
             |     |  |  |  |   | |   | |  | |||| |   ||||| ||  ||| ||  | || ||  |   |||   |  ||||| ||||||||||| ||||| ||||| ||||||||||| ||||| |||||||| || |||| |  | || ||    | ||||    ||  ||    ||||  
gtactgtcttgattctcccgtgctaaacttgctgctgaacaaagcatttctccattggttata-gctcactctttgctgactccctgt--gtcacagAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGCACATCTCTTTTCTAAGCT--TCTCGTCCACCTGTCTGGTTGTTGAGTTGAAGCTGTG

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G103059_T01 (Zea mays), 3'ss of exon 3

gtgcatagaacatagatcagttcattataccggatttgtaacttggtaatttgcttacattgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG
                           |||    | |||   ||||| ||  | | ||  | || |   |   |||   |  ||||||||||||||||| ||||| ||||| |||||||| || ||||| || ||||| || |||                                        
--------------------------gtactccctgtgtccattggttata-gatcactctttgcttactccctgt--gtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAATGGCAAGGGCACGTCTCTTTTCTAA----------------------------------------

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA08G08030.1 (Glycine max), 3'ss of exon 3

------gtgcatagaac-atagatcagttcattataccggatttgtaacttggtaatt--tgcttacattgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG
      | |  |    |  | | |  |||  |  |   |   || | |    ||   |  ||||| | ||   |   | |||| ||   | ||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||                                         
gtataagcgtctcttcccgtcgtttcgtttttgtttttgtcgttttgatcgcgtggctgatgcttgctttcc-tccttctgtttttgcctgcagAGGTGCAAGCATTTTGAGATCGGTGGTGACAAGAAGGGAAAAGGAACCTCTCTGTTCTAG----------------------------------------

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA05G24930.1 (Glycine max), 3'ss of exon 3

-----gtgcatagaacatagatcagttcatta--taccggatttgtaacttggtaatttgcttacattgt-----gttggtttgttgtt---tatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTT-TGTACTTGCTG---
      ||| |  ||||   ||     || |   | ||  |  ||    |||    ||||   || | ||      ||| | ||| |||   | || |||||||||||||| || |||||||||||||||||||||||||| ||||||||||| || ||  | |     || |||   | ||| ||||     |||  |||   
tacttttgcctcaaacagtaattttgccactgattcccaaacatgctcattgccgttttgaacacgtggttgatgcttgctatgtggttctgttttgcagAGGTGCAAGCACTTTGAGATCGGTGGTGACAAGAAGGGAAAAGGAACATCTCTCTTCTAGATGGA----ATATTAGAATTTGCAATTTCACACACTCTCTGTAC

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA08G19320.1 (Glycine max), 3'ss of exon 3

----gtgcatagaacatagatcagttcattataccgg--atttgtaacttggtaatttgcttacattgtgttg--gtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG-
    ||  || | | | | | || |   ||| |  ||   ||||  |  || |   | ||| |   | ||||   || | |  | |  | |||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||| || ||| |     |   |||  | ||  ||| |||    ||   
gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACATCTCTGTTCTA-GTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAAT

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3

----gtgcatagaacatagatcagttcattataccgg--atttgtaacttggtaatttgcttaca--ttgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTG--------GTTTCA-----TCTTAT-TTTCTGCGATTTTTGTACTTGCTG-------------------
    ||  || | | | | | || |   ||| |  ||   ||||  |  || |   | ||| |    ||||    || | |  | |  | |||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||| ||  |||        | |||      | |||| |||| || || || | |  |  |                    
gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 3

gtgcatagaacatagatcagttcattataccggatttgtaacttggtaatttgcttacattgtgttggtttgttgtttattt----cagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG---
||  || |||   | ||   | | || |   || |   |    ||||   | ||| |   | |||| |||   ||| ||| |    |||||||||||||| || ||||| ||||||||||||||||| ||||||||||| || || ||  |||     |  |    ||  | | ||| |||    ||     
gtatatggaaagca-atggatgcttttt--tggttccatg---tggtgtgtggctaatggt-tgttagttc-ctgtctatgttgtgcagAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACATCACTCTTCTAGTTTGAG---AATTAGGATTTAGAGCTTTATGTTTCAGCAATGT

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA15G05670.1 (Glycine max), 3'ss of exon 3

----gtgcatagaacatagatcagttcattataccggatttgtaacttggtaatttgcttacattgtgttggtttgttgtttat----ttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG---
    ||  || |||   | ||   | | || |   || |   |    ||||   | ||| |   | |||| |||   ||| |||    | |||||||||||||| || ||||| ||||||||||||||||| ||||||||||| || || ||  |||     |  |    ||  | | ||| |||    ||     
gttagtatatggaaagca-atggatgcttttt--tggttccatg---tggtgtgtggctaatggt-tgttagttc-ctgtctatgttgtgcagAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACATCACTCTTCTAGTTTGAG---AATTAGGATTTAGAGCTTTATGTTTCAGCAATGT

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv01s0011g02090.t01 (Vitis vinifera), 3'ss of exon 3

----gtgcatagaacatagatcagttcattataccggatttgtaacttggtaatttgcttacattgtgttggtttgttgtt---tatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTT--TCATCTTATTTTCTGCGATTTTTGTACTTGCTG
    |||  | || ||||||| | ||  |  | |      | |   |||| | || || ||  || | |    |||   ||   | || ||||||||||||||||| ||||| || || || |||||||||||||| || ||||| |||||  | | ||  ||||  | |||| ||| ||  |  |  |   | 
gtcagtgtcttgaccatagattactttttccttcttttggtttgctttggcatttggcatagtttttttattattgccattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGATAAGAAGGGAAAGGGCACTTCTCTATTTTAGATGGATTATTCATGGTCTTTTTTGCTATACT-ATCTTCCTT-

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3

----gtgcatagaacatagat--cagttcattataccggatttgtaacttg-gtaatttgcttacattgtgttgg---tttgttgtt---------tatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTT-TTGTACT-TGCTG
    | |  |  | |  |     || ||   | | || |  || |   ||       || |||  |      ||    |||||||||         | || ||||||||||||||||| ||||| || || ||||||||||| |||||||| ||||| ||||| |   |    |  |  |  | | ||  ||  | || | || ||
gtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGG--AGGCAAACTTGGTCATTTTCGTCTTGCTATATTATGTTG

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv01s0011g02080.t01 (Vitis vinifera), 3'ss of exon 4

------------gtgcatagaacatagatcagttcattat---accggatttgtaacttggtaatttgcttacattgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTG-GTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG
                 ||     ||  | ||   ||| |   || |  |||   |  || |         || |    ||   |  |||  | || |||||||||||||| || ||||||||||| || |||||||| ||||| || ||||| |||||  |||     |     | || | | |    |  | | |  | 
caaaaatttgtcaaatgtattttttaagttagcaaattttgaaactgtttttaataactgtttccaaatgaacctcagcttctgtcattggattttgcagAGGTGCAAGCACTTTGAGATCGGTGGCGATAAGAAGGGGAAGGGCACTTCTCTATTTTAGATTGCAAAACCAGGCAATTGCAGGGTCCATCTTCCATTTT-

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: EDP05070 (Chlamydomonas reinhardtii), 3'ss of exon 4

---------------------------------------------------------------------------------------------------------------gtgcatagaacatagatcagttcattataccg-gatttgtaacttggtaatttgcttacattgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG---
                                                                                                                 ||    ||| |    | || |||    | | |   | | ||   ||    | |   |     | | |   ||| ||     ||| | |||||||| ||||||||||||||||||||||||   ||||| |  |    ||       |     |   |       ||  |    |   | ||  |   
gtgggtggggcgccagatgtggggcactgatacgcttgcgggctgtgttgtggcacggatcaacagtaaaccggacgaagcattgtggctggggtggggaagcgacagtacaagccagcaacttgtgcccgtgcatgcgccagtggcctctgacgccgttcgctccgctc-caacgctcgcccgttcttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAG---AAGGGCAACTAAACGTGGCGGCCTACCGGCGGTTAGGAACGTGTAACGAGTCCGCGTGAGGCAA

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S2_415V6.1 (Physcomitrella patens), 3'ss of exon 4

--------------------------------------------------------------------gtgcata----gaacatagatcagttcatt-ataccggatt------tgtaacttg---gtaatttgcttacattgtgttggt-ttgttgtttattt--cagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTG---GTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG
                                                                     ||||||    | ||  |  | | || ||| | |    |||      ||   |||    |  |||  ||  | |   |      || || | || |   ||| | |||||||| |||||||| ||||| ||||||||||| || ||||||   || |||||  |     | || |  || | ||| | ||  ||   |       
gtgatttaatccgttttatcttagttttcggccatttacatttgcctaggaataagtgtccgacttctatgcataattgggactcaagttattttattcacattctattatctcttgcctcttcctcgctattcactagcctgacgcgcacgtttttatgtaatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGATATAATGCTTTACTTTGTATTCCGAGAAATTATGAAGCA---

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S115_63V6.1 (Physcomitrella patens), 3'ss of exon 4

-------------gtgcatagaacatagatcagttca--ttataccggatttgtaacttggtaatttgcttacattgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTAC-TTGCTG-
             | |  |      |   |    |||     |  |  | |  | ||     ||||||       |     |   | ||   |  | ||| | ||||||||||||||||| || || ||||||||||| ||||| ||    || || || |    |  | ||   |       || | | |    ||| |  
ctccttttctctggggtgttacgtctcatttctctcaagcggtttcacaatgatcacccctcaatttgaagggcctaatacgtagtattaaattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAGCTCTTCTAGGC--ATCACGTCAGGTCCAACTAGAGTCTGGAGTGTTGATAA

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4

----------------------------gtgcatagaacatagatcagt---tcattataccggatttgtaacttggtaatt-tgcttacattgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG
                             ||     ||||  | |  ||   ||||||   |  | |  |   ||| |  |  | | |  |   |||  ||| |||   | || ||| | |||||||| ||||||||||| || ||||||||||| |||||||||   || || ||    |  ||  |   || |||| |  ||    | |     |
gtaattagtcctttactctgtgcgcactatgaggtaaacactggtgtgtatgtcattaatacataatgatgttttgttgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTAGACAGTGTTGTTAGAATGTTCTCCTTTTAGAATGCGGAAAG

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: EFJ05955 (Selaginella moellendorffii), 3'ss of exon 4

gtgcatagaacatagatcagttcattataccggatttgtaacttggtaatttgcttacattgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG---
                               |||||| |  ||| |    |  || |      | ||| ||  |    | | ||||||||||| || || || |||||||||||||||||||| ||||||||     |||| ||||   |    ||   ||||||  |   | ||| |  || ||   
----------------------------gtgggatttttctctttgctcgtccctgat----cgatggctttcttgcaaatccagAGGTGCAAACACTTTGAAATCGGTGGTGACAAGAAGGGCAAGGGAACGAGCTTGTTCTAAGCGCGCGCGATTCAATTTTCCTC---TCTTGGATATGATGTTC

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: EFJ07113 (Selaginella moellendorffii), 3'ss of exon 4

gtgcatagaacatagatcagttcattataccggatttgtaacttggtaatttgcttacattgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG
                               |||||| |  ||| |    |  || |      | ||| ||  |    | | ||||||||||| || || || |||||||||||||||||||| ||||||||     |||| ||||   |    ||   ||||||  |  ||     |  | || 
----------------------------gtgggatttttctctttgctcgtccctgat----cgatggctttcttgcaaatccagAGGTGCAAACACTTTGAAATCGGTGGTGACAAGAAGGGCAAGGGAACGAGCTTGTTCTAAGCGCGCGCGATTCAATTTTCCTCTCTTGGATGATGTTCTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|125215059|gb|EL229263.1|EL229263

EST:     ACTTTTCGCAGCGTCCTATCAAG                         AGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT
genomic: ACTTTTCGCAGCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT

EST: gi|125301747|gb|EL315832.1|EL315832

EST:     CGCAGCGTCCTATCAAG                         AGGTGCAAGGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACAAT
genomic: CGCAGCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGTGCAA-GCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAAC-AT

EST: gi|164154749|gb|ES162661.1|ES162661

EST:     TTTTCGCAGCGTCCTATCAAG                         AGGTGGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATC
genomic: TTTTCGCAGCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGT-GCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATC

EST: gi|164185046|gb|ES205794.1|ES205794

EST:     GAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAAG                         AGGTGCAAGCATTTCGAGATCGGTGG
genomic: GAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAA-Ggtgcatagaa ... tttatttcagAGGTGCAAGCATTTCGAGATCGGTGG

EST: gi|301501066|gb|HO206606.1|HO206606

EST:     TGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAG                         AGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT
genomic: TGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT

EST: gi|164235053|gb|ES158082.1|ES158082

EST:     GCACTTTTCGCAGCGTCCTATCAAG                         AGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT
genomic: GCACTTTTCGCAGCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT

EST: gi|86076372|gb|DR372129.1|DR372129

EST:     TGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAG                         AGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT
genomic: TGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT

EST: gi|164068143|gb|ES061806.1|ES061806

EST:     CTGCAAGCACTTTTCGCAGCGTCCTATACAAG                         AGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATC
genomic: CTGCAAGCACTTTTCGCAGCGTCCTAT-CAAGgtgcatagaa ... tttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATC

EST: gi|47828759|gb|CK118443.1|CK118443

EST:     TGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAG                         AGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT
genomic: TGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT

EST: gi|124961571|gb|EL036089.1|EL036089

EST:     CAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAG                         AGGTGCAAGCATTTCGAGATCGGTGGT
genomic: CAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGTGCAAGCATTTCGAGATCGGTGGT

EST: gi|152035372|gb|BP851782.2|BP851782

EST:     TGAGGCTTCAGTGTCAAAGCTGAAAGCACTTTTCGCAGCGTCCTATCAAG                         AGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGACCATCT
genomic: TGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT

EST: gi|164027890|gb|ES175898.1|ES175898

EST:     CAGCGTCCTATCAAG                         AGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT
genomic: CAGCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT

EST: gi|125310074|gb|EL324159.1|EL324159

EST:     TCGCAGCGTCCTATCAAG                         AGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT
genomic: TCGCAGCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT

EST: gi|164064832|gb|ES107018.1|ES107018

EST:     TTTTCGCAGCGTCCTATCAAG                         AGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT
genomic: TTTTCGCAGCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT

EST: gi|124768788|gb|EH858918.1|EH858918

EST:     TTTCGCAGCGTCCTATCAAG                         AGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT
genomic: TTTCGCAGCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT

EST: gi|164019624|gb|ES115676.1|ES115676

EST:     GCGTCCTATCAAG                         AGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT
genomic: GCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT

EST: gi|164061979|gb|ES149240.1|ES149240

EST:     TGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAG                         AGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACA
genomic: TGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACA

EST: gi|124724949|gb|EH816351.1|EH816351

EST:     GAGGTCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAG                         AGGTGCAAGCATTTCGAGA
genomic: GAGG-CTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGTGCAAGCATTTCGAGA

EST: gi|86086549|gb|DR382308.1|DR382308

EST:     TGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAG                         AGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT
genomic: TGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT

EST: gi|125104202|gb|EL158356.1|EL158356

EST:     TGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAG                         AGGTGCAAGCATTTCG
genomic: TGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGTGCAAGCATTTCG

EST: gi|125051311|gb|EL123580.1|EL123580

EST:     TGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAG                         AGGTGCA-GCATTTCGAGATCGGTGGTGACAAGAAGGGAAA
genomic: TGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAA

EST: gi|124750643|gb|EH840773.1|EH840773

EST:     TGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAG                         AGGTGCAAGCATTTCGAGA
genomic: TGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGTGCAAGCATTTCGAGA

EST: gi|164113526|gb|ES068502.1|ES068502

EST:     GCAGCGTCCTATCAAG                         AGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT
genomic: GCAGCGTCCTATCAAGgtgcatagaa ... tttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCT

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

cggatttgtaacttggtaatttgcttacattgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG

                     tgcttac  putative branch site (score: 2)
                                             tttatttc  putative PPT
                                      tttgttgtttattt  TA-rich tract

Data associated with selected splice site

Sequence

Basic information

Orthologous splice sites

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments