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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtagcaagccgtttttcgggttttgaagacatctcactgttctttgatctagtgcaaatatgaattaggatgtggttgtgtgtatgcataatgcagGATGTTTCTTTACCTCATCTGGAGGTTTGAGGAGCTATGAGCATCCATCAAATGAGTTAAAGCCGGTACCAAGGGTAGACAGTTCGGGTGAGGTTTGCGG

Basic information

species Arabidopsis thaliana
transcript AT3G22850.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G22850.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA20G28930.1 (Glycine max), 3'ss of exon 3
-----gtatgtagcaagccgtttttcgggttttgaagacatctcactgttctttgatctagtgcaaatatgaattaggatgtggttgtgtgtatgcataatgcagGATGTTTCTTTACCTCATCTGGAGGTTTGAGGAGCTATGAGCATCCATCAAATGAGTTAAAGCCGGTACCAAGGGTAGACAGTTCGGGTGAGGTTTGCGG
     |||| |  |    |  | |    ||||     |  ||  ||  ||   |  || |  |   ||   |   |  |  |   |     ||||     | |||||| ||||||| |  |||| ||||||||||| || | ||||||||||   |||||| | ||||| ||||||||||| |||||||| ||  |||| || ||
gttatgtatttgactgttcactgtctatgtttattccatgtcggacatttggatattcaatggtctatgcaagaaataacataaattatcctatg-----ttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTAATGAGGTGAAGCCTGTACCAAGGGTTGACAGTTCTGGACAGGTGTGTGG

upper sequence: AT3G22850.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA10G38840.1 (Glycine max), 3'ss of exon 3
gtatgtagcaagccgtttttcgggttttgaagacatctcactgttctttgatctagtg--caaatatgaat-taggatgtggt-tgtgtgtatgcataatgcagGATGTTTCTTTACCTCATCTGGAGGTTTGAGGAGCTATGAGCATCCATCAAATGAGTTAAAGCCGGTACCAAGGGTAGACAGTTCGGGTGAGGTTTGCGG
 |   |  ||||  |||  |    | || |     || |  |  |   | |||   |   |||   |  ||  | ||  |    | | | ||| |    | |||||| ||||||| |  |||| ||||||||||| || | ||||||||||   |||||| | ||||| ||||||||||| |||||||| ||  |||| || ||
tttcatttcaag--gttaatttactgttcactgt-tcacgtttcttcctaatcggatattcaatggtctatgcaagaaataacatatat-tatcccatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTGAATGAGGTGAAGCCTGTACCAAGGGTTGACAGTTCCGGACAGGTGTGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124992457|gb|EL064726.1|EL064726
EST:     TCCTTTGCGCCATTCCCTAAAG                         GATGTTTCTTTACCTCATCTGGAGGTTTGAGGAGCTATGAGCATCCATCAA
genomic: TCCTTTGCGCCATTCCCTAAAGgtatgtagca ... cataatgcagGATGTTTCTTTACCTCATCTGGAGGTTTGAGGAGCTATGAGCATCCATCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgatctagtgcaaatatgaattaggatgtggttgtgtgtatgcataatgcagGATGTTTCTTTACCTCATCTGGAGGTTTGAGGAGCTATGAGCATCCATCAAATGAGTTAAAGCCGGTACCAAGGGTAGACAGTTCGGGTGAGGTTTGCGG
 ctttgat  putative branch site (score: 5)
              aaatatgaatta  TA-rich tract