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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtcaactcaacatttcaaacttacataccacatagcaaatcttgatagttacttgttctaaacggcaccgttttttatcagACCCTAAGTCTGAAAGCAGGCTGGCTTTACTAAACCTAAACATATACGTGCCAAGGGACGAGCGATTTAGCCATGTGAAGTTTTCAGACTTCCTCGCTTA

Basic information

species Arabidopsis thaliana
transcript AT3G22400.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47830905|gb|CK120589.1|CK120589
EST:     AATCCACCAAATCAG                         ACCCTAAGTCTGAAAGCAGGCTGGCTTTACTAAACCTAAACATATACGTGC
genomic: AATCCACCAAATCAGgtagtcaact ... tttttatcagACCCTAAGTCTGAAAGCAGGCTGGCTTTACTAAACCTAAACATATACGTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accacatagcaaatcttgatagttacttgttctaaacggcaccgttttttatcagACCCTAAGTCTGAAAGCAGGCTGGCTTTACTAAACCTAAACATATACGTGCCAAGGGACGAGCGATTTAGCCATGTGAAGTTTTCAGACTTCCTCGCTTA
                             ttctaaa  putative branch site (score: 2)
                                         ccgtttttt  putative PPT
                                            ttttttatca  TA-rich tract