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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcacatggagatttcgtcttcttatttaggatgttttatttcatgttcatatattttgctgaatccatcagatttctaatgattttctgtcttgttgttttactctgcagTGCGTAGCATCTCATTCTGACACGAGAATGTTATTTCTCAAGG

Basic information

species Arabidopsis thaliana
transcript AT3G20800.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124869758|gb|EH954195.1|EH954195
EST:     CCGTGTTTGCAACTCGCTCGCTCTTCTTCAG                         TGCGTAGCATCTCATTCTGACACGAGAATGTTATTTCTCAAGG
genomic: CCGTGTTTGCAACTCGCTCGCTCTTCTTCAGgttcacatgg ... tactctgcagTGCGTAGCATCTCATTCTGACACGAGAATGTTATTTCTCAAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctgaatccatcagatttctaatgattttctgtcttgttgttttactctgcagTGCGTAGCATCTCATTCTGACACGAGAATGTTATTTCTCAAGG
                  ttctaat  putative branch site (score: 2)
                                          ttttactct  putative PPT
                atttctaatgatttt  TA-rich tract