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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttagatccagtttatatctcacatttatatgtccatgtctcgctgtgaatctaatgtgttgttattttccaacattatagCTTGTTTCGTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATTAGCGATG

Basic information

species Arabidopsis thaliana
transcript AT3G20290.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164231956|gb|ES127608.1|ES127608
EST:     TTCAAAGAGTTTATTGTTGCCATGCAG                         CTTGTTTCGTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATT
genomic: TTCAAAGAGTTTATTGTTGCCATGCAGgtttagatcc ... aacattatagCTTGTTTCGTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATT
EST: gi|125059561|gb|EL128238.1|EL128238
EST:     GAGACAAGGGTATCTTGGTTTCAAAGAGTTTATTGTTTGCCATGCAG                         CTTGTTTCGTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATT
genomic: GAGACAAGGGTATCTTGGTTTCAAAGAGTTTATTG-TTGCCATGCAGgtttagatcc ... aacattatagCTTGTTTCGTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATT
EST: gi|116430168|gb|EG472760.1|EG472760
EST:     CAAAGAGACAAGGGTATCTTGGTTTCAAAGAGTTTATTGTTGCCATGCAG                         CTTGTTTCGTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATT
genomic: CAAAGAGACAAGGGTATCTTGGTTTCAAAGAGTTTATTGTTGCCATGCAGgtttagatcc ... aacattatagCTTGTTTCGTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATT
EST: gi|125263744|gb|EL277829.1|EL277829
EST:     GTTTCAAAGAGTTTATTGTTGCCATGCAG                         CTTGTTTCGTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATT
genomic: GTTTCAAAGAGTTTATTGTTGCCATGCAGgtttagatcc ... aacattatagCTTGTTTCGTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatgtccatgtctcgctgtgaatctaatgtgttgttattttccaacattatagCTTGTTTCGTTGGCTCAAACTGGACATGAAATATCGCATGAAGTTCTTATTAGCGATG
                       atctaat  putative branch site (score: 3)
                                       ttttcca  putative PPT
                                 ttgttatttt  TA-rich tract