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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttactctctttgattaggatattatctcctcccttatatttatctatgtcattgttcttgaaatgtgcctctttttccccccgcttataaagGTTATGGAGAAGAGCAACTTTAAAATAACAAGTAATGAAGAGATGGAAGTTGCACACTCTGGGCAGTATCTTCTCAATCTTCCCATCAAAGTTGATGAGT

Basic information

species Arabidopsis thaliana
transcript AT3G19340.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G19340.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os01g70390.1 (Oryza sativa), 3'ss of exon 3
-----------------------------------------gttactc-tctttgattaggatattatctcct--cccttata-----tttatctatgtcattgttcttgaaatgtgcctctttttccccccgcttataaagGTTATGGAGAAGAGCAACTTTAAAATAACAAGTAATGAAGAGATGGAAGTTGCACACTCTGGGCAGTATCTTCTCAATCTTCCCATCAAAGTTGATGAGT
                                           ||| | |   |||| ||||||||   |  |     ||| |        |  ||| ||     | ||  |   |   |  | |     |   |  |  |||| ||| | || ||||| || || |||  |    |||| ||| | ||  |||| || ||||| || ||||| || |||||||||||||||||||||||  
gtaaacaaactgtttgggagatggaactattatatgtctcaactacacatgaatgatcaggatatttcttaataagtattacaagggacccagatatatccacaatattacacaataaattgtatgaaatct--tggtgcagGTGATGCAAAAAAGCAATTTCAACATATTATCAGATGATGAGGTTGAGCTTGCTCATTCTGGACAATATCTGCTGAATCTTCCCATCAAAGTTGATGAAG

upper sequence: AT3G19340.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 3
gttactctctttgattaggatattatctcctcccttatatttatct-----atgtcattgttcttgaaatgtgcct--ctttttccccccgcttataaagGTTATGGAGAAGAGCAACTTTAAAATAACAAGTAATGAAGAGATGGAAGTTGCACACTCTGGGCAGTATCTTCTCAATCTTCCCATCAAAGTTGATGAGT
||     | |  ||    ||| || | |  |   ||| | ||||||     || || || |  ||   || |   |  |||| || |  |  ||||| |||| ||||||||||||||||| || ||| ||| | | |||||||| || ||||| | ||| ||||||||||| || ||||||||||||| ||||||||| |
gtgcacgtgtgagagagagatgttttgttatgttttaaacttatcttctccatttctttatcgtttccattttttttcctttctctcttcttttatacagGTGATGGAGAAGAGCAACTTCAAGATAGCAACTGAGGAAGAGATTGATGTTGCTCTCTCAGGGCAGTATCTCCTAAATCTTCCCATCACAGTTGATGAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatctatgtcattgttcttgaaatgtgcctctttttccccccgcttataaagGTTATGGAGAAGAGCAACTTTAAAATAACAAGTAATGAAGAGATGGAAGTTGCACACTCTGGGCAGTATCTTCTCAATCTTCCCATCAAAGTTGATGAGT
                          tgtgcctctttttccc  CT-rich tract
                                               ttataaa  TA-rich tract