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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttaatttctactactgatcaccctcaaatgtatctagtcctatagtacttacaatttcaaatcgaaatccatactatcatatattattgatgatcaacgtgacaagaatatttggaaattgcgtatagGTATCGGATTCTCATGTCTTGTGACTGGAGTCACCACTGATTCCATCAAAGACGCGGTCGGTAGGCCACGCCCTAACTTCTTTTACCGATGTTTTCCCAA

Basic information

species Arabidopsis thaliana
transcript AT3G18220.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877322|gb|AU238153.1|AU238153
EST:     GTACTATTACTATCGAAGAGATGTTTATGATCTTCATCACGCCATTCTCG                         GTATCGGATTCTCATGTTCTTGTGACTGGAGTCACCACTGATTCCATCAAA
genomic: GTACTATTACTATCGAAGAGATGTTTATGATCTTCATCACGCCATTCTCGgtgagttaat ... ttgcgtatagGTATCGGATTCTCATGT-CTTGTGACTGGAGTCACCACTGATTCCATCAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatcatatattattgatgatcaacgtgacaagaatatttggaaattgcgtatagGTATCGGATTCTCATGTCTTGTGACTGGAGTCACCACTGATTCCATCAAAGACGCGGTCGGTAGGCCACGCCCTAACTTCTTTTACCGATGTTTTCCCAA
           tattgat  putative branch site (score: 3)
     atatattattgatgat  TA-rich tract