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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgaccaaacttcttcttttggacttactactacttgtgtctgtgatgagacgagtttaatatgtgatgattcgcttaactcttttcagGTAGATCATATATTTTTGTCTCGTGTGTGCTCAGAGACAGCAGGCGGGCTTCCAG

Basic information

species Arabidopsis thaliana
transcript AT3G16260.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877303|gb|AU238134.1|AU238134
EST:     GGGTTGCAACGTTTTTGTACTGAACATAAAATTAAGTTATCAAAG                         GTAGATCATATATTTTTGTCTCGNGTGTGCTCAGAGACAGCAGGCGGGCTT
genomic: GGGTTGCAACGTTTTTGTACTGAACATAAAATTAAGTTATCAAAGgtgtgaccaa ... ctcttttcagGTAGATCATATATTTTTGTCTCGTGTGTGCTCAGAGACAGCAGGCGGGCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgtctgtgatgagacgagtttaatatgtgatgattcgcttaactcttttcagGTAGATCATATATTTTTGTCTCGTGTGTGCTCAGAGACAGCAGGCGGGCTTCCAG
                                       gcttaac  putative branch site (score: 3)
                                             ctcttttc  CT-rich tract
                   agtttaatat  TA-rich tract