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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttgttgaaatgttgattgaaactgaagaagccttctgtgaattttctttactattggcgttaggctctgtgttctgatctactatcttgtgatatccttctttagATGTTCCTATCAGTTCTAGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAG

Basic information

species Arabidopsis thaliana
transcript AT3G15660.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164120538|gb|ES008520.1|ES008520
EST:     TCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATA                         ATGTTCCTATCAGTTCTAGAAACATTC
genomic: TCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATAgtaagttttg ... ccttctttagATGTTCCTATCAGTTCTAGAAACATTC
EST: gi|86075951|gb|DR371708.1|DR371708
EST:     TCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATA                         ATGTTCCTATCAGTTCTAGAAACATTCTAGAAGACCAAGAGTTGAAAAACG
genomic: TCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATAgtaagttttg ... ccttctttagATGTTCCTATCAGTTCTAGAAACATTCTAGAAGACCAAGAGTTGAAAAACG
EST: gi|19874734|gb|AU235565.1|AU235565
EST:     TCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATA                         ATGTTCCTATCAGTTCTAGAAACATTCTAGAAGACCAAGAGTTGAAAAACG
genomic: TCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATAgtaagttttg ... ccttctttagATGTTCCTATCAGTTCTAGAAACATTCTAGAAGACCAAGAGTTGAAAAACG
EST: gi|124972598|gb|EL046282.1|EL046282
EST:     TCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATA                         ATGTTCCTATCAGTTCTAGAAAC
genomic: TCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATAgtaagttttg ... ccttctttagATGTTCCTATCAGTTCTAGAAAC
EST: gi|86079164|gb|DR374921.1|DR374921
EST:     TCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAATTTTGCAGCAATATA                         ATGTTCCTATCAGTTCTAGAAACATTCTAGAAGACCAAGAGTTGAAAAACG
genomic: TCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATAgtaagttttg ... ccttctttagATGTTCCTATCAGTTCTAGAAACATTCTAGAAGACCAAGAGTTGAAAAACG
EST: gi|86081518|gb|DR377275.1|DR377275
EST:     TCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATA                         ATGTTCCTATCAGTTCTAGAAACATTCTAGAAGACCAAGAGTTGAAAAACG
genomic: TCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATAgtaagttttg ... ccttctttagATGTTCCTATCAGTTCTAGAAACATTCTAGAAGACCAAGAGTTGAAAAACG
EST: gi|19740939|gb|AU226292.1|AU226292
EST:     TCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATA                         ATGTTCCTATCAGTTCTAGAAACATTCTAGAAGACCAAGAGGTTGAAAAAC
genomic: TCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATAgtaagttttg ... ccttctttagATGTTCCTATCAGTTCTAGAAACATTCTAGAAGACCAAGA-GTTGAAAAAC
EST: gi|125261988|gb|EL276073.1|EL276073
EST:     AGTTTTGCAGCAATATA                         ATGTTCCTATCAGTTCTAGAAACATTCTAGAAGACCAAGAGTTGAAAAACG
genomic: AGTTTTGCAGCAATATAgtaagttttg ... ccttctttagATGTTCCTATCAGTTCTAGAAACATTCTAGAAGACCAAGAGTTGAAAAACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattggcgttaggctctgtgttctgatctactatcttgtgatatccttctttagATGTTCCTATCAGTTCTAGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAG
                     ttctgat  putative branch site (score: 3)
                                          tatccttcttt  putative PPT
                                               ttcttta  TA-rich tract