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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttttacattcagctctagcgttattaaaaacttccagtttcataaaaccaatttgggatacatatgtttttgttttcagATATGGGATGTTGCAAGAAGCCAGTTGGTTACAGAGATGAAGGAGCACAAGAAGCGAGTATGGTCCATCGATATTTCATCAGCAGACCCGACTTTGCTGG

Basic information

species Arabidopsis thaliana
transcript AT3G15354.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125230869|gb|EL244954.1|EL244954
EST:     GCTACATAAAGAGCCAAATTGCATCAAGTAACTTTGATGGTGTTGTTCAG                         ATATGGGATGTTGCAAGAAGCCAGTTGGTTACAGAGAT
genomic: GCTACATAAAGAGCCAAATTGCATCAAGTAACTTTGATGGTGTTGTTCAGgttagtttta ... ttgttttcagATATGGGATGTTGCAAGAAGCCAGTTGGTTACAGAGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaaacttccagtttcataaaaccaatttgggatacatatgtttttgttttcagATATGGGATGTTGCAAGAAGCCAGTTGGTTACAGAGATGAAGGAGCACAAGAAGCGAGTATGGTCCATCGATATTTCATCAGCAGACCCGACTTTGCTGG
                                          tttttgttttc  CT-rich tract
                                     atatgtttttgtttt  TA-rich tract