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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtgtaggaacttgaaaaagctatcttttgtgatttatgtcttagattagaacattatctcatgcgtgcttctgttttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAAACAGC

Basic information

species Arabidopsis thaliana
transcript AT3G13920.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13920.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA13G16570.1 (Glycine max), 3'ss of exon 3
---gtatgtgtgtaggaacttgaaaaagctatctt------ttgtgatttatgtcttagattagaacattatc-tcatgcgtgcttctgttttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAAACAGC
   ||||   | ||  ||           | | ||       |  | ||| ||  ||    ||       ||| | |  |  |  |   || |   ||||||||||||||||| ||||| ||||||||||| || || || |||||||| ||||| |||||||| ||||| |||||||||||||| |||||||| || ||
gctgtattattttaataaaccatggtgtttttattgtcgagctacggtttctgctttgtggtatgttccaatccttaaactagaattaattgtgctttagGTTTTGAGAAGCCATCTGCCATTCAGCAAAGGGGGATAGTTCCCTTCTGCAAGGGACTTGATGTTATTCAGCAGGCTCAGTCTGGAACTGGGAAGACGGC

upper sequence: AT3G13920.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA09G07530.3 (Glycine max), 3'ss of exon 3
-----------gtatgtgtgtaggaacttgaaaaagctatcttttgtgatttatgtcttagattagaacattat-ctcatgcgtgcttctgttttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAAACAGC
           | || | |||   ||    |    | |   | |  ||||    || | |   |  |||  |||  | |  |  | ||   || | | ||||||||||||||||| || |||||||||||||| ||||| || || ||||| ||||| ||||| || || |||||||| |||||||| ||||||||||||||
caaattccactgcatttttgtgtaaatc--atggtgtttattgtcctgatgctggtatcaatctttaactgtatatttaaactagtttgatttgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCAAGGGACTTGACGTTATACAACAGGCCCAGTCTGGAACTGGGAAAACAGC

upper sequence: AT3G13920.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA15G18760.1 (Glycine max), 3'ss of exon 3
-------------------------------------------------------------------------------------------------------------gtatgtgtgtaggaacttgaaaaagctatcttttgtgatttatgtcttagattagaacattatctcatgcgtgcttctgttttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAAACAGC
                                                                                                              | | | | | |||   |||||   |  | |||  || | |   ||||  | || | ||||     |  | || ||   || | | ||||||||||||||||| || ||||||||||| |||||||| || || ||||| ||||| |||||||| || |||||||| |||||||| |||||||| |||||
gtagatttaactttctttatgtcctctattacttttttaattttgtttttcaaaccaagagttattttgtattttatcgtgatgacaattgtattttttgttatttgttatgtttttattggactgtgaaatttcattttttattggtatcaatctttaactata-catt----taaacttgtttgatttgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCAAGGGACTTGATGTTATACAACAGGCCCAGTCTGGAACTGGGAAGACAGC

upper sequence: AT3G13920.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA15G03020.1 (Glycine max), 3'ss of exon 3
-----gtatgtgtgtaggaactt-gaaaaagctatcttttgtgatttatgtcttagattagaacattatctcatgcg-tgcttctgttttttct---tagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAAACAGC
       | | |  |  ||  || ||| |||  | |   ||| || ||    | |   ||  |||  |     || | |  || | || ||  |   |||||||||||| ||||||||| || |||||||| ||||| || || ||||| |||||||| ||||||||||| |||||||||||||| ||||| || |||||
tttgatgaggagcttcagattttagaagaagaaaacaaatgttatataaagttaactctaccacaagacaatgtgtgatttttttattcttgttctatagGTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCAAGGGTCTGGATGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAGACAGC

upper sequence: AT3G13920.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA17G06110.1 (Glycine max), 3'ss of exon 3
-gtatgtgtgtaggaacttgaaaaagctatcttttgtgat--------ttatgtcttagattagaacattatc-tcatgcgtgcttctgttttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAAACAGC
 ||||   | ||       |       | | | |||| ||        || ||  ||    ||       ||| | |  |  |  |   || |   ||||||||||||||||| || || ||||||||||| || || || |||||||| ||||| |||||||| |||||||||||||| ||||| |||||||| || ||
tgtattattttaatggacagtggtgtttttttgttgtcatgccactggttctgctttgcggtatgttccaatccttaaactagtatgatttgtgctttagGTTTTGAGAAGCCATCAGCCATTCAGCAAAGGGGGATAGTTCCCTTCTGCAAGGGACTTGATGTTATTCAACAGGCTCAATCTGGAACTGGGAAGACGGC

upper sequence: AT3G13920.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA13G42360.1 (Glycine max), 3'ss of exon 3
--------gtatgtgtgtaggaacttgaaaa---agcta-tcttttgtgatttatgtcttagattagaacattatctcatgcgtgcttctgttttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAAACAGC
        | ||  || | | |  || | ||   ||| | | |  | ||   |      ||    |  ||  | | | ||   |  ||||  | ||  ||||||||||||| ||||||||| || ||||| || ||||| || || ||||| |||||||| ||||||||||| |||||||||||||| ||||| || |||||
gatgctgagcatcagtattgcatttttagaacaaagcaaatgtcatatgcagttaactctaccacaagacgatgtgtgatttttaattct--tgttctttagGTTTTGAGAGGCCTTCTGCAATCCAGCAGAGGGGAATTGTTCCTTTCTGCAAGGGTCTGGATGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAGACAGC

upper sequence: AT3G13920.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA08G20300.2 (Glycine max), 3'ss of exon 3
-------gtatgtgtgtaggaacttgaaaa----agctatcttttgtgatttatgtcttagattagaacattatctcatgcgtgcttctgttttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAAACAGC
       ||||  |||  | |  |  ||||    |  | | | |  || ||||  |  |  |  | || | | | | ||  ||  |  | || ||| | ||||||||||| |||||||||||| |||||||| ||||| || || ||||| || || || |||||||||||||||||||||||||| || || || |||||
catgagggtattagtgatgcacttcaaaaagagtaagtgtttctcttgctttactttatcaaa-aaaataatgtatgatatgttttattattgtttttaagGTTTTGAGAGGCCTTCTGCTATACAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGACTGGATGTGATTCAACAGGCTCAGTCTGGAACAGGAAAGACAGC

upper sequence: AT3G13920.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA07G00950.1 (Glycine max), 3'ss of exon 3
---------gtatgtgtgtaggaacttgaaaaagctatcttttgtgatttatgtcttag-attagaacattatctcatgcgtgcttctgttttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAAACAGC
         ||||  |||  | |  |  ||||   ||  | ||      | |   |||  |  | || | | | | ||  ||  |  | || ||  | ||||||||||| ||||||||| || |||||||| ||||| || || ||||| || ||||| |||||||||||||||||||||||||| || || || |||||
ttcatgagggtattagtgatgcacttcaaaaagaataagtgttacttgctttactttatcacaaaaataatgtgtgatatgttttattattgttcttaagGTTTTGAGAGGCCTTCTGCAATCCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTGGATGTGATTCAACAGGCTCAGTCTGGAACAGGAAAGACAGC

upper sequence: AT3G13920.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA04G05580.1 (Glycine max), 3'ss of exon 3
----gtatgtgtgtaggaa-cttgaaaaagctatcttttgtgatttatgtcttagattagaacattatctcatgcgtgc---ttctgttttttcttag-
    | ||   ||  | |  ||       | |   | ||||  ||  ||| |||  | | ||| | | |   || |||    || | ||  |||| ||   ||||||||||||| ||||| ||||| ||||| || || || || ||||| ||||| |||||||| ||||| || || || ||||| ||||| ||||| ||
tcttgaatagctgctgcactctctgttttgattcttgttgttgttattgttttaattgataac-tgagcatttgtgtggatgttgtattacttctgagaagGTTTTGAGAAGCCCTCTGCAATTCAACAAAGGGGGATTGTTCCTTTCTGCAAGGGGCTTGATGTTATTCAGCAAGCACAATCTGGAACTGGAAAAACTGC

upper sequence: AT3G13920.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA06G05580.1 (Glycine max), 3'ss of exon 3
-----gtatgtg-tgtaggaacttgaaaaagctatctt-ttgtgatt-tatgtcttagatta--gaacattatctcatgcgtgcttctgttttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAAACAGC
      ||  || || |    ||      |   || || |||| ||| | |||| | ||| |  || ||||    |    ||  |  |  || |    ||||||||||||||| ||||| ||||| ||||| || || || || ||||| ||||| |||||||| ||||| || || || ||||| ||||| ||||| ||
cttgaatacttgctgcactctctgttttgattcatgttgttgttattatttgtcattgataactgagcatttgtgcggatgttgtattacttctgagaagGTTTTGAGAAGCCCTCTGCAATTCAACAAAGGGGGATTGTTCCTTTCTGCAAGGGGCTTGATGTTATTCAGCAAGCACAATCTGGAACTGGAAAAACTGC

upper sequence: AT3G13920.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv11s0016g01920.t01 (Vitis vinifera), 3'ss of exon 2
-gtatgtgtgtaggaacttgaaaaagctatcttt------tgtgatttatgt--cttagattagaac-attatctcatgcgtgcttctgttttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAAACAGC
 |||| |   || |   | |  |||  |   |||      | || |||   |  || |  | || || || |  | |    ||  |   | ||    |||||||||| || |||||||| ||||||||||||||||| || ||||| || ||||| |||||||| ||||| || |||||||| || || || || || ||
tgtatattgatatgttttcgtgaaaatttcttttcctccgtttgttttgcattgctcatgtcagtaccatcaattgaaagatggataattcttcgtgtagGTTTTGAAAAACCTTCTGCAATTCAGCAAAGAGGAATTGTTCCCTTTTGCAAGGGACTTGATGTAATTCAGCAAGCTCAGTCAGGAACAGGAAAGACTGC

upper sequence: AT3G13920.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv09s0002g01760.t01 (Vitis vinifera), 3'ss of exon 3
gtatgtgtgtaggaacttgaaaaa-----gctatcttttgtgatttatgtct--tagattagaacattatctcatgcgtgcttctg---ttttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAAACAGC
 |   |  | |  |   ||||  |     ||| ||||||||  ||   | ||      |   |||||   |  |    |    |||   || ||||  ||||||||||||||||||||| || || ||||||||||| || || ||||| ||||| || |||||||| |||||||| || ||||| ||||||||||| ||
ttcaatacgcaaaattatgaactactgttgctgtcttttgttgttctggcctaccttctcctaacatgcacaaacctcttaccctgggtttctttcaaagGTTTTGAGAAGCCTTCTGCGATCCAACAAAGAGGAATTGTTCCATTCTGCAAGGGGCTCGATGTGATCCAACAGGCACAATCTGGAACTGGGAAAACTGC

upper sequence: AT3G13920.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv04s0008g01000.t01 (Vitis vinifera), 3'ss of exon 2
--------gtatgtgtgtaggaacttgaaaaagctatcttttgtgatttatgtcttagattagaacattatctcatgcgtgcttctgttttttct--tagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAAACAGC
          ||   ||   ||  || |      | | | || |||   |  |    |   | |  |  | || |    ||  |||   |||  |  |||||||||||||||| ||||| |||||||||||||| || || ||||||   ||||| |||||||| ||||| || || |||||||| ||||| ||||||||
tgcatcataaatcactgcctgatttttattgttatttatgttttgagccaccttcatggaaaaatgaaaagctgaaagttggatctaactttcttggtagGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCATCAAGGGGCTTGATGTAATTCAGCAAGCACAGTCTGGAACTGGAAAAACAGC

upper sequence: AT3G13920.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv04s0008g00990.t01 (Vitis vinifera), 3'ss of exon 1
gtatgtgtgtaggaacttgaaaaagctatct-tttgtgatttatgtcttagattagaacatt-atctcatgcgtgcttc-tgttttttctta-gGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAAACAGC-----------
   |     |      || |   |  |   | |||||| | |       ||||| ||    | ||    ||| || |   |||| | | | | ||  | |||||||| ||||| ||||| ||||  ||||| || ||||||||||||||||| ||||||||||| ||||| || || |||||||||||||| ||           
--gtcctcattcttttttaatccaatttcatctttgtggtctgga----agatttgatttctgattaggtgcttgttgaatgttctgtgtgaagggatcgagaagCCATCTGCAATTCAACAAAAGGGAATTGTACCCTTCTGTAAGGGTCTGGATGTGATTCAGCAGGCCCAATCCGGTACTGGGAAAACCGCGACTTTCTGCT

upper sequence: AT3G13920.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S31_150V6.5 (Physcomitrella patens), 3'ss of exon 3
--gtatgtgt-gtaggaacttgaaaaagctatcttttgtgatttatgtctta--gattagaacattat--ctcatgcgtgcttctgttttttct---tagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAAACAGC
  | |||| | || ||  ||||         |  |||   |   |   |  |  ||   | ||  |    |||     |  ||||| ||   ||    ||||||||||||||| |||||||| || ||  | |||||||| ||||||   |||||||||||||| |||||||| || |||||||| ||||| || |||||
ttgcatgttttgtgggtgcttgtggtgttcgtagtttcctaccgagaaccaattgaaccgcactctgctgctctaatctcattctggttgacctgtacagGTTTTGAGAAGCCATCTGCTATCCAACAGCGTGGAATCGTTCCCTTCACCAAGGGTCTTGATGTCATTCAACAAGCCCAGTCTGGAACTGGCAAGACAGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86034984|gb|DR330737.1|DR330737
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86034973|gb|DR330726.1|DR330726
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|116436248|gb|EG478840.1|EG478840
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86035139|gb|DR330892.1|DR330892
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86034992|gb|DR330745.1|DR330745
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCT-ATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86034913|gb|DR330666.1|DR330666
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86035064|gb|DR330817.1|DR330817
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86034985|gb|DR330738.1|DR330738
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86035170|gb|DR330923.1|DR330923
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86034997|gb|DR330750.1|DR330750
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGSTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86035066|gb|DR330819.1|DR330819
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|164025979|gb|ES152212.1|ES152212
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86034888|gb|DR330641.1|DR330641
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86034967|gb|DR330720.1|DR330720
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|47829698|gb|CK119382.1|CK119382
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86035051|gb|DR330804.1|DR330804
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86035130|gb|DR330883.1|DR330883
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86035092|gb|DR330845.1|DR330845
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86034884|gb|DR330637.1|DR330637
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86034857|gb|DR330610.1|DR330610
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGGAATCGTCCCCTTCTGT
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGA-GGAATCGTCCCCTTCTGT
EST: gi|124730343|gb|EH821745.1|EH821745
EST:     CAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: CAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|116420410|gb|EG463002.1|EG463002
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86035131|gb|DR330884.1|DR330884
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86035037|gb|DR330790.1|DR330790
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|116403403|gb|EG445995.1|EG445995
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86034886|gb|DR330639.1|DR330639
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86035054|gb|DR330807.1|DR330807
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|86035070|gb|DR330823.1|DR330823
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTA
EST: gi|164093426|gb|EL983712.1|EL983712
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGCCTTCTGCTATT
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGCCTTCTGCTATT
EST: gi|124873575|gb|EH955220.1|EH955220
EST:     TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATG                         GTTTTGAGAAGC
genomic: TGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGgtatgtgtgt ... tttttcttagGTTTTGAGAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatttatgtcttagattagaacattatctcatgcgtgcttctgttttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAAACAGC
                                    tgcttctgttttttct  CT-rich tract
                                            ttttttctta  TA-rich tract