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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattaccggtctactcatatattattcatttcttaagttcaagcttttggagcatcttgatgtgttattttggtttgaatttgaattatttgttttgcagAGTGAACAAACCATACTTGCCAATAGCAGCAGGAGATCTATCAGTGCAGTCTGCTTGGTTGTTAGTGATATTTTTTGCGATAGCAGGGCTTTTAGTTGTC

Basic information

species Arabidopsis thaliana
transcript AT3G11945.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085149|gb|DR380908.1|DR380908
EST:     AATGGTTATATAGTCGGCATCAATCAGATCTACGACATTGGAATCGACAA                         AGTGAACAAACCATACTTGCCAATAGCAGCAGGAGATCTATCAGTGCAGTC
genomic: AATGGTTATATAGTCGGCATCAATCAGATCTACGACATTGGAATCGACAAgtatgcagca ... tgttttgcagAGTGAACAAACCATACTTGCCAATAGCAGCAGGAGATCTATCAGTGCAGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggagcatcttgatgtgttattttggtttgaatttgaattatttgttttgcagAGTGAACAAACCATACTTGCCAATAGCAGCAGGAGATCTATCAGTGCAGTCTGCTTGGTTGTTAGTGATATTTTTTGCGATAGCAGGGCTTTTAGTTGTC
         tcttgat  putative branch site (score: 4)
                                           tttgtttt  putative PPT
                   ttattttggtttgaat  TA-rich tract