1 5' 3' | 2 5' 3' | 3 5' 3' |
gttagttactagagactttattgcttctttgagttaaacgaaagatcgattaccaaattggctcgtccataaaacgcagGTGGATAGACGCAGCGAAGTTCTTGACCGGAGCATCGACCGTGGGAAGCCTTGCTATCCCAATCATCTTAAGGCACGCACAGATGATCGAGACAGGTGCA
species | Arabidopsis thaliana |
transcript | AT3G11530.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCTTTGGAGGAGGCTCAACCCAATTCCTTATTAGTCGGGACGGTGGAGG GTGGATAGACGCAGCGAAGTTCTTGACCGGAGCATCGACCGTGGGAAGCCTEST: gi|124834761|gb|EH919200.1|EH919200
genomic: TTCTTTGGAGGAGGCTCAACCCAATTCCTTATTAGTCGGGACGGTGGAGGgttagttact ... taaaacgcagGTGGATAGACGCAGCGAAGTTCTTGACCGGAGCATCGACCGTGGGAAGCCT
EST: TTCTTTGGAGGAGGCTCAACCCAATTCCTTATTAGTCGGGACGGTGGAGG GTGGATAGACGCAGCGAAGTTCTTGACCGGAGCATCGACCGTGGGAAGCCTEST: gi|86078791|gb|DR374548.1|DR374548
genomic: TTCTTTGGAGGAGGCTCAACCCAATTCCTTATTAGTCGGGACGGTGGAGGgttagttact ... taaaacgcagGTGGATAGACGCAGCGAAGTTCTTGACCGGAGCATCGACCGTGGGAAGCCT
EST: TTCTTTGGAGGAGGCTCAACCCAATTCCTTATTAGTCGGGACGGTGGAGG GTGGATAGACGCAGCGAAGTTCTTGACCGGAGCATCGACCGTGGGAAGCCT
genomic: TTCTTTGGAGGAGGCTCAACCCAATTCCTTATTAGTCGGGACGGTGGAGGgttagttact ... taaaacgcagGTGGATAGACGCAGCGAAGTTCTTGACCGGAGCATCGACCGTGGGAAGCCT
ttctttgagttaaacgaaagatcgattaccaaattggctcgtccataaaacgcagGTGGATAGACGCAGCGAAGTTCTTGACCGGAGCATCGACCGTGGGAAGCCTTGCTATCCCAATCATCTTAAGGCACGCACAGATGATCGAGACAGGTGCA
ataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttactagagactttattgcttctttgagttaaacgaaagatcgattaccaaattggctcgtccataaaacgcagGTGGATAGACGCAGCGAAGTTCTTGACCGGAGCATCGACCGTGGGAAGCCTTGCTATCCCAATCATCTTAAGGCACGCACAGATGATCGAGACAGGTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG