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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaaaaacgtatttttttggttatcttgttttagtcctgtggtgtttcttagatgcagttttattaactgtttctgtaactgcagATGTCTGAGAAAATCTACAATACTTTGGACAAGCCGACTAGATTCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTG

Basic information

species Arabidopsis thaliana
transcript AT3G11170.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124767154|gb|EH857284.1|EH857284
EST:     CTCACCACCAGAACCATGGACGTGTTGAGAATGACGAATCTTGGCATCCT                         ATGTCTGAGAAAATCTACAATACTTTGGACAAGCCG
genomic: CTCACCACCAGAACCATGGACATGTTGAGAATGACGAATCTTGGCATCCTgtaagtcaaa ... gtaactgcagATGTCTGAGAAAATCTACAATACTTTGGACAAGCCG
EST: gi|124933600|gb|EL010744.1|EL010744
EST:     ATGTTGAGAATGACGAATCTTGGCATCCT                         ATGTCTGAGAAAATCTACAATACTTTGGACAAGCCGACTAGATTCTTTAGA
genomic: ATGTTGAGAATGACGAATCTTGGCATCCTgtaagtcaaa ... gtaactgcagATGTCTGAGAAAATCTACAATACTTTGGACAAGCCGACTAGATTCTTTAGA
EST: gi|125022466|gb|EL094735.1|EL094735
EST:     ATGTTGAGAATGACGAATCTTGGCATCCT                         ATGTCTGAGAAAATCTACAATACTTTGGACAAGCCG
genomic: ATGTTGAGAATGACGAATCTTGGCATCCTgtaagtcaaa ... gtaactgcagATGTCTGAGAAAATCTACAATACTTTGGACAAGCCG
EST: gi|124834976|gb|EH919415.1|EH919415
EST:     ATGACGAATCTTGGCATCCT                         ATGTCTGAGAAAATCTACAATACTTTGGACAAGCCGACTAGATTCTTTAGA
genomic: ATGACGAATCTTGGCATCCTgtaagtcaaa ... gtaactgcagATGTCTGAGAAAATCTACAATACTTTGGACAAGCCGACTAGATTCTTTAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagtcctgtggtgtttcttagatgcagttttattaactgtttctgtaactgcagATGTCTGAGAAAATCTACAATACTTTGGACAAGCCGACTAGATTCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTG
                                        tttctgt  CT-rich tract
                            ttttattaactgttt  TA-rich tract