1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttgtttttttttttttttttttttccaatgaatttagatgcatctaatctacttgatgtttaactcagtcattttctcttgtcatcgctgattcctctgatatatctacttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAACCCAGCCGTGTTCACCGGAGATACACTT
species | Arabidopsis thaliana |
transcript | AT3G10850.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG TCACACCAAGGGTCACATTAGTTTATTATGTGAACGGAAAAGAACGAGAAAEST: gi|86023772|gb|DR319525.1|DR319525
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTT-ATTATGTGAACGGAAAAGAAGGAGAAA
EST: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG TCACACCAAGGGTCACATTAGTTATTATGTGACCGGAAAAGAAGGAGAAAAEST: gi|125302397|gb|EL316482.1|EL316482
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
EST: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG TCTACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAEST: gi|125290756|gb|EL304841.1|EL304841
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTC-ACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAA
EST: ATATTAACATATTGGCTCTCCACACTCCTTG TCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGACGGAGAAAAEST: gi|86023773|gb|DR319526.1|DR319526
genomic: ATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
EST: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG TCACACCAAGGGTCACATTAGTTATTATGTGACCGGAAAAGAAGGAGAAAAEST: gi|124822321|gb|EH907187.1|EH907187
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
EST: TTGGCTCTCCACACTCCTTG TCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAAEST: gi|125014382|gb|EL086651.1|EL086651
genomic: TTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
EST: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG TCACACCAAGGGEST: gi|125226986|gb|EL241071.1|EL241071
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGG
EST: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG TCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAAEST: gi|124952367|gb|EL027644.1|EL027644
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
EST: GCTCTCCACACTCCTTG TCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAAEST: gi|125308726|gb|EL322811.1|EL322811
genomic: GCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
EST: TGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG TCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAAEST: gi|124740997|gb|EH832159.1|EH832159
genomic: TGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
EST: AGGATATTAACATATTGGCTCTCCACACTCCTTG TCACACCAAGGGTCACATTAGTTATTATGTGAAEST: gi|125136561|gb|EL176591.1|EL176591
genomic: AGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAA
EST: TCAGGATATTAACATATTGGCTCTCCACACTCCCTG TCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAAEST: gi|86023775|gb|DR319528.1|DR319528
genomic: TCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
EST: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG TCACACCAAGGGTCACATTAGTTATTATGTGACCGGAAAAGAAGGAGAAAAEST: gi|164031369|gb|ES193572.1|ES193572
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
EST: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG TCGCACCAAGGGTCACAEST: gi|163985592|gb|EL967496.1|EL967496
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACA
EST: ATTAACATATTGGCTCTCCACACTCCTTG TCACACCAAGGGTCACATTAGTTATTATGTGEST: gi|124964803|gb|EL039040.1|EL039040
genomic: ATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTG
EST: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG TCACACCAAGGGTCACATTAGTTATTATGTEST: gi|86023774|gb|DR319527.1|DR319527
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGT
EST: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG TCACACCAAGGGTCACATTAGTTATTATGTGACCGGAAAAGAAGGAGAAAAEST: gi|125086593|gb|EL146019.1|EL146019
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAA
EST: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG TCACACCAAGGGTCACATTAGTTAEST: gi|124799466|gb|EH889145.1|EH889145
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTA
EST: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTG TCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGG
genomic: AAGCTGACTTTGGGTCAGGATATTAACATATTGGCTCTCCACACTCCTTGgtttgttttt ... cttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGG
ctcagtcattttctcttgtcatcgctgattcctctgatatatctacttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAACCCAGCCGTGTTCACCGGAGATACACTT
ctctgat putative branch site (score: 4)
tctactt putative PPT
atatatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttttttttttttttttttttccaatgaatttagatgcatctaatctacttgatgtttaactcagtcattttctcttgtcatcgctgattcctctgatatatctacttgttacagTCACACCAAGGGTCACATTAGTTATTATGTGAACGGAAAAGAAGGAGAAAACCCAGCCGTGTTCACCGGAGATACACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT