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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttttttttagcttgttactactgaaatccatgggaatcaatcgttgtttggcttcattttctttctttacatgatgagaaaaaatgtggtagtaacttttaaggaaaaactttggtttccagGGTTTGAAGCTGGTGGGCAAAACACACCCTCTAATATTTGGCCATGGTCCATTGTTGGTGATCATTCATCCATATATGTAGCTACAGACCGTTCATCATG

Basic information

species Arabidopsis thaliana
transcript AT3G10740.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116444622|gb|EG487214.1|EG487214
EST:     CAACCATGCTGGTGCCGGTGGATTATGGGTCGAACTTGTTAGCAACAGAG                         GGTTTGAAGCTGGTGGGCAAAACACACCCTCTAATATTTGGCCATGGTCCA
genomic: CAACCATGCTGGTGCCGGTGGATTATGGGCCGAACTTGTTAGCAACAGAGgttagttttt ... tggtttccagGGTTTGAAGCTGGTGGGCAAAACACACCCTCTAATATTTGGCCATGGTCCA
EST: gi|124941761|gb|EL018086.1|EL018086
EST:     CAACCATGCTGGTGCCGGTGGATTATGGGCCGAACTTGTTAGTAACAGAG                         GGTTTGAAGCTGGTGGGCAAAACACACCCTCTAATATTTGGCCA
genomic: CAACCATGCTGGTGCCGGTGGATTATGGGCCGAACTTGTTAGCAACAGAGgttagttttt ... tggtttccagGGTTTGAAGCTGGTGGGCAAAACACACCCTCTAATATTTGGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacatgatgagaaaaaatgtggtagtaacttttaaggaaaaactttggtttccagGGTTTGAAGCTGGTGGGCAAAACACACCCTCTAATATTTGGCCATGGTCCATTGTTGGTGATCATTCATCCATATATGTAGCTACAGACCGTTCATCATG
                      tagtaac  putative branch site (score: 1)
                                                tttcc  putative PPT
                         taacttttaa  TA-rich tract