Sequence
atgc intronic sequence ATGC exonic sequencegtaagatattatttgagaatctaggagattgattcatattctcaaaatgtagttgcgttatggttttgttttgtgtttggcagAAAGGTCGTCTATCTGAGGATGAAGCTCGGTTCTACAGTGCAGAAGTTGTTGATGCTCTTGAGTATATACATAATATGGGACTGATACATCGAGATATTA
Basic information
species | Arabidopsis thaliana |
transcript | AT3G10540.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G10540.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA20G33140.1 (Glycine max), 3'ss of exon 3
------------gtaagatattatttgagaatctaggagattgattcatattct------caaaatgtagttgcgttatggttttgttttgtgtttggcagAAAGGTCGTCTATCTGAGGATGAAGCTCGGTTCTACAGTGCAGAAGTTGTTGATGCTCTTGAGTATATACATAATATGGGACTGATACATCGAGATATTA
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tttttggaatatggaagctgttaatttgtaagctagtaactttctgcatgcttgttactgcatgatatctactagcaagatttctgatttctatgtg-cagAAAGGTCGTCTATCAGAGGATGAGGCACGATTCTATGCAGCTGAAGTTGTTGATGCTCTCGAATACATACATAATTTGGGAGTCATACATCGTGATATTA
upper sequence: AT3G10540.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA10G34430.1 (Glycine max), 3'ss of exon 3
------------gtaagatattatttgagaatctaggagattgattcatattct------caaaatgtagttgcgttatggttttgttttgtgtttggcagAAAGGTCGTCTATCTGAGGATGAAGCTCGGTTCTACAGTGCAGAAGTTGTTGATGCTCTTGAGTATATACATAATATGGGACTGATACATCGAGATATTA
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tttttgggatatggaagttgttaatttgtaagctagtaactttctgcatgcttgttactgcatgatatctactagcaacctttctgatttctatgtg-cagAAAGGTCGTCTATCAGAGAATGAGGCACGATTCTATGCAGCTGAAGTTATCGATGCTCTTGAATACATACATAATTTGGGAGTCATACATCGTGATATTA
upper sequence: AT3G10540.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv13s0074g00100.t01 (Vitis vinifera), 3'ss of exon 4
--------gtaagatattatttgagaatctaggagattgattcatattctcaaaa-tgtagttgcgttatggttttgttttgtg--tttg-------gcagAAAGGTCGTCTATCTGAGGATGAAGCTCGGTTCTACAGTGCAGAAGTTGTTGATGCTCTTGAGTATATACATAATATGGGACTGATACATCGAGATATTA
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ttcttgatcttaaat-ttgtctctgcttcttgtatgtggtgcatcatgcctacaactgcaagtttgctattgtaacatccagtgaatttgtgtgagtgcagAAAGGTCGTTTGTCAGAGAATGAAGCTCGCTTCTATGCAGCTGAAGTTGTAGATGCTCTTGAATATATTCATAGTCTAGGATTGATACACCGGGATATTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86070404|gb|DR366161.1|DR366161EST: TGGCGCTTGAGTCTTGTGAAGGTGGGGAACTTTTCGACCAAATCACCAGN AAAGGTCGTCTATCTGAGGATGAAGCTCGGTTCTACAGTGCAGAAGTTGTT
genomic: TGGCGCTTGAGTCTTGTGAAGGTGGGGAACTTTTCGACCAAATCACCAGAgtaagatatt ... tgtttggcagAAAGGTCGTCTATCTGAGGATGAAGCTCGGTTCTACAGTGCAGAAGTTGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgattcatattctcaaaatgtagttgcgttatggttttgttttgtgtttggcagAAAGGTCGTCTATCTGAGGATGAAGCTCGGTTCTACAGTGCAGAAGTTGTTGATGCTCTTGAGTATATACATAATATGGGACTGATACATCGAGATATTA
gattgat putative branch site (score: 4)
ttttgtttt TA-rich tract