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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagctcattttggaactcagaatacattagcacttctcaattaggggaacatagcaatttttctagtctctcactggcttctttttcttaacctttgttctgagacaagtttttatttgcttcctgctttgcagTGTTGTGATGAAGTTGCTGCGAAGTATCCTGAGATATATTACGAGAAGGTTGTTATTGACAATTGCTGTATGATG

Basic information

species Arabidopsis thaliana
transcript AT3G09810.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv08s0040g01700.t01 (Vitis vinifera), 3'ss of exon 3
gtcagctcattttggaactcagaatacattagcacttctcaattaggggaacatagcaatttttctagtctctcactggcttctttttcttaacctttgttctgagacaagtttttatttgcttcctgctttgcagTGTTGTGATGAAGTTGCTGCGAAGTATCCTGAGATATATTACGAGAAGGTTGTTATTGACAATTGCTGTATGATG
                                   || ||  |||      | || |    ||| |  |   | |      || ||| | ||  | |  | || ||   ||||||      ||   ||  ||||||||||||   |||||||| | |||||| || |||||| | || ||| | ||||| |||||||||||||||||||||
----------------------------------gttgtctgttacaaatgcttaac----tttatgttgcataa------tcatttacctatgcatcctactaaggtgagtttt------ctctttgtgttgcagTGTTGTCGGGAAGTTGCAGAGAAGTACCCAGAGATAAAATATGAGGAAGTTGTCATTGACAATTGCTGTATGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttttcttaacctttgttctgagacaagtttttatttgcttcctgctttgcagTGTTGTGATGAAGTTGCTGCGAAGTATCCTGAGATATATTACGAGAAGGTTGTTATTGACAATTGCTGTATGATG
      tcttaac  putative branch site (score: 2)
                              tttttatttgcttcct  putative PPT
                         acaagtttttattt  TA-rich tract