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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttctatgtttttcctctagttcaacttgttcctatccaatccagacttttcatctatagtacttgaattcacgagtgactgtttgcaatgttgcagGTTGTCTTCAGCACCGTTTCTCTCCTTTTTATGGGAAAGTTCCTGGAACCTGTCTGGGGTTCCACGGAGTTCCTTAAGTTCATCTTTGTGGTGAACTTCC

Basic information

species Arabidopsis thaliana
transcript AT3G07950.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301501412|gb|HO206952.1|HO206952
EST:     TTGCCTGGAATCTGATAACAAGCGGCTATTTTGAACTCTCAGTATATGGG                         GTTGTCTTCAGCACCGTTTCTCTCCTTTTTATGGGAAAGTTCCTGGAACCT
genomic: TTGCCTGGAATCTGATAACAAGCGGCTATTTTGAACTCTCAGTATATGGGgtatgtttct ... aatgttgcagGTTGTCTTCAGCACCGTTTCTCTCCTTTTTATGGGAAAGTTCCTGGAACCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagacttttcatctatagtacttgaattcacgagtgactgtttgcaatgttgcagGTTGTCTTCAGCACCGTTTCTCTCCTTTTTATGGGAAAGTTCCTGGAACCTGTCTGGGGTTCCACGGAGTTCCTTAAGTTCATCTTTGTGGTGAACTTCC
     ttttcat  TA-rich tract