1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagacttccaaacccattctttagatatgttttctacatcttctcttccgtttcccgtttcatgtctgagcaaatacttttgttttcgttatgtggactgcagACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCTGGTGACTTGGTTGGAGTTAACAAAGATAGCTACTTGATTTTGGATACCT
species | Arabidopsis thaliana |
transcript | AT3G05530.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTACCAGTTGTTGGAEST: gi|301502331|gb|HO207871.1|HO207871
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCTACCAGTTGTTGGA
EST: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCTEST: gi|86071039|gb|DR366796.1|DR366796
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCT
EST: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCTEST: gi|86071062|gb|DR366819.1|DR366819
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCT
EST: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTACCAGTEST: gi|86071059|gb|DR366816.1|DR366816
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCTACCAGT
EST: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCTEST: gi|86071028|gb|DR366785.1|DR366785
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCT
EST: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTACCAGEST: gi|86071063|gb|DR366820.1|DR366820
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCTACCAG
EST: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGEST: gi|86071050|gb|DR366807.1|DR366807
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTG
EST: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCTEST: gi|86071057|gb|DR366814.1|DR366814
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCT
EST: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTACCAGTTGTTEST: gi|86071049|gb|DR366806.1|DR366806
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCTACCAGTTGTT
EST: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCTEST: gi|86071047|gb|DR366804.1|DR366804
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCT
EST: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCTEST: gi|86071045|gb|DR366802.1|DR366802
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCT
EST: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCTEST: gi|86071048|gb|DR366805.1|DR366805
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCT
EST: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCTEST: gi|86071065|gb|DR366822.1|DR366822
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCT
EST: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTACCANTTGTTGGACTCGTGGATCCTGATAGTTTGEST: gi|86071056|gb|DR366813.1|DR366813
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTG
EST: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTACCAGTTGGTGGAEST: gi|125160706|gb|EL188171.1|EL188171
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCTACCAGTTGTTGGA
EST: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTAEST: gi|86071038|gb|DR366795.1|DR366795
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCTA
EST: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGANAGTTTGAAACCTEST: gi|86071035|gb|DR366792.1|DR366792
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCT
EST: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTACCAGTTGTTGGACTCGTGGATEST: gi|86071053|gb|DR366810.1|DR366810
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCTACCAGTTGTTGGACTCGTGGAT
EST: TCGCAACGGAAAGGAAAAAGGNGTTGGGGTTGAAAACGTCTACACGGCAG ACCATCTTTTCTAACCAGTTGEST: gi|86071037|gb|DR366794.1|DR366794
genomic: TCGCAACGGAAAGGAAAATGT-GTTGTG-TTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTT-CTA-CCAGTTG
EST: ACTCGCAACGGAAAGGAAAATGNGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTACCAGTTGGTGGAEST: gi|86071030|gb|DR366787.1|DR366787
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCTACCAGTTGTTGGA
EST: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTTCTACCAGTTGTTGGGACTCGTGGATCEST: gi|86071060|gb|DR366817.1|DR366817
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTT-CTACCAGTTGTTGG-ACTCGTGGATC
EST: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTEST: gi|125022321|gb|EL094590.1|EL094590
genomic: ACTCGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCT
EST: CGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAG ACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCT
genomic: CGCAACGGAAAGGAAAATGTGTTGTGTTGAAAACGTCTACACGGCAGgtgagacttc ... tggactgcagACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCT
cgtttcccgtttcatgtctgagcaaatacttttgttttcgttatgtggactgcagACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCTGGTGACTTGGTTGGAGTTAACAAAGATAGCTACTTGATTTTGGATACCT
aaatacttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagacttccaaacccattctttagatatgttttctacatcttctcttccgtttcccgtttcatgtctgagcaaatacttttgttttcgttatgtggactgcagACCATCTTTCTACCAGTTGTTGGACTCGTGGATCCTGATAGTTTGAAACCTGGTGACTTGGTTGGAGTTAACAAAGATAGCTACTTGATTTTGGATACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG