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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtttactcctcttctgttagttgtttatatatttgatttggttacatacatgtgtaatcatcgtgattgtttcagGTGGATATATATGATTCGAGGACATTCATTGGTGGCAAAGTGGGTTCTTTTGTAGATAGACGTGGGAACCATATTGAAATGGGATTACATGTTTTCTTCG

Basic information

species Arabidopsis thaliana
transcript AT3G04870.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G04870.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA20G37170.1 (Glycine max), 3'ss of exon 2
-------------------------------------------------------------------------------------------------gtgtttactcctcttctgttagt-tgtttatatatttgatt--tggttacat--acatgt-gtaatcatcgtgat---tgtttcagGTGGATATATATGATTCGAGGACATTCATTGGTGGCAAAGTGGGTTCTTTTGTAGATAGACGTGGGAACCATATTGAAATGGGATTACATGTTTTCTTCG
                                                                                                 |  ||   |  || |  |||||| |||||   ||||    |  || || |||    ||||  | |  |  ||  |   |  ||||||||||||||||||| || ||| | || |||||||||||||| ||||||||||| || | | ||||||| || |||||||||||||| ||||||||||| |
gtttagctccttctttctctgtttgtattaatgagctactgatatcttaataattttgaaatcggatgttgtggtaatatatagtaaagttacttttgaattccttgatccttagttagtctgttttgttattcaggtgttgattgcatcaggatgttatgactaatgtattctatcattcagGTGGATATATATGAGTCAAGGCCTTTTATTGGTGGCAAAGTTGGTTCTTTTGTTGACAAAGGTGGGAATCACATTGAAATGGGATTGCATGTTTTCTTTG

upper sequence: AT3G04870.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA10G30220.1 (Glycine max), 3'ss of exon 2
----------gtgtttactcc-tcttctgttagtt-gtttatatatttgat-----ttggttacatacatgtgtaatcatcg-tg-attgt----ttcagGTGGATATATATGATTCGAGGACATTCATTGGTGGCAAAGTGGGTTCTTTTGTAGATAGACGTGGGAACCATATTGAAATGGGATTACATGTTTTCTTCG
          ||| || ||   || |   |||||| |||| |||| || |      ||| || |||    |||| || |    || ||| |    ||||||||||||| ||||| || ||  | || |||||||||||||| || |||||||| || | | ||||||| || |||||||||||||| ||||||||||| |
gcaaaggggagtgattccttgatcgttgattagtttgtttttataattcaggtgtgttgtttgcattagggtgttatgactaatgtattctatcattcagGTGGATATCTATGAGTCAAGACCTTTTATTGGTGGCAAAGTTGGCTCTTTTGTTGACAAAGGTGGGAATCACATTGAAATGGGATTGCATGTTTTCTTTG

upper sequence: AT3G04870.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv14s0030g01740.t01 (Vitis vinifera), 3'ss of exon 2
-------------------------------------------------------------------------------------------------------------gtgtttactcctcttctgttagttgtttatatatttgatttggttaca-tacatgtgtaatcatcgtgattgtttcagGTGGATATATATGATTCGAGGACATTCATTGGTGGCAAAGTGGGTTCTTTTGTAGATAGACGTGGGAACCATATTGAAATGGGATTACATGTTTTCTTCG
                                                                                                                |  |    | |  | || | | |    || ||  ||  ||  | | |   | | |||      || ||  ||||||| ||||||||||| || ||| | ||||||||||| |||||||| |||||||| ||||||||||| || || |||||||||||| | || || ||||| |
gtttggattatatatgtaaagatatgttggatgtatctttggcatttatcatactttcaaacaaaacatgaattagtttttcagctaagtttgtttcaaaatggaattcccttggatgattttaattttggctttgctgattttccatcaggagaaaattggtttataaatggtttggtttgttcagGTAGATATATATGAGTCAAGGTCTTTCATTGGTGGAAAAGTGGGCTCTTTTGTTGATAGACGTGGAAATCACATTGAAATGGGACTGCACGTGTTCTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttatatatttgatttggttacatacatgtgtaatcatcgtgattgtttcagGTGGATATATATGATTCGAGGACATTCATTGGTGGCAAAGTGGGTTCTTTTGTAGATAGACGTGGGAACCATATTGAAATGGGATTACATGTTTTCTTCG
          atttgat  putative branch site (score: 5)
                                              ttgtttc  putative PPT
     tatatatttgattt  TA-rich tract