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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataggttttgattgcagagttacatatactgttgtcgacattagcttttgacttcttactagattttctttttcgtatactactatccagGCTATCCACAACTTTGTTAAAGAGAATTTCAAGTTCCTAGTGACTGACACTGTCGACGGTCCTGATTCTACTTCAAAATGCATCCGTGTGCGAGTGAATT

Basic information

species Arabidopsis thaliana
transcript AT3G04820.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116462950|gb|EG505542.1|EG505542
EST:     AAGTCTTACCAGTTGTTCTTGATCCAAGTTCTGACAAATCCAAGAGAACG                         GCTATCCACAACTTTGTTAAAGAGAATTTCAAGTTCCTAGTGACTGACACT
genomic: AAGTCTTACCAGTTGTTCTTGATCCAAGTTCTGACAAATCCAAGAGAACGgtataggttt ... tactatccagGCTATCCACAACTTTGTTAAAGAGAATTTCAAGTTCCTAGTGACTGACACT
EST: gi|116431187|gb|EG473779.1|EG473779
EST:     AAGTCTTACCAGTTGTTCTTGATCCAAGTTCTGACAAATCCAAGAGAACG                         GCTATCCACAACTTTGTTAAAGAGAATTTCAAGTTCCTAGTGACTGACACT
genomic: AAGTCTTACCAGTTGTTCTTGATCCAAGTTCTGACAAATCCAAGAGAACGgtataggttt ... tactatccagGCTATCCACAACTTTGTTAAAGAGAATTTCAAGTTCCTAGTGACTGACACT
EST: gi|116421231|gb|EG463823.1|EG463823
EST:     AAGTCTTACCAGTTGTTCTTGATCCAAGTTCTGACAAATCCAAGAGAACG                         GCTATCCACAACTTTGTTAAAGAGAATTTCAAGTTCCTAGTGACTGACACT
genomic: AAGTCTTACCAGTTGTTCTTGATCCAAGTTCTGACAAATCCAAGAGAACGgtataggttt ... tactatccagGCTATCCACAACTTTGTTAAAGAGAATTTCAAGTTCCTAGTGACTGACACT
EST: gi|116421230|gb|EG463822.1|EG463822
EST:     AAGTCTTACCAGTTGTTCTTGATCCAAGTTCTGACAAATCCAAGAGAACG                         GCTATCCACAACTTTGTTAAAGAGAATTTCAAGTTCCTAGTGACTGACACT
genomic: AAGTCTTACCAGTTGTTCTTGATCCAAGTTCTGACAAATCCAAGAGAACGgtataggttt ... tactatccagGCTATCCACAACTTTGTTAAAGAGAATTTCAAGTTCCTAGTGACTGACACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgacattagcttttgacttcttactagattttctttttcgtatactactatccagGCTATCCACAACTTTGTTAAAGAGAATTTCAAGTTCCTAGTGACTGACACTGTCGACGGTCCTGATTCTACTTCAAAATGCATCCGTGTGCGAGTGAATT
                 ttcttac  putative branch site (score: 2)
                        tagattttcttttt  TA-rich tract