Sequence
atgc intronic sequence ATGC exonic sequencegtttcgaaaacatgatcttgaagtcttcatcttgtattttacgtgttgttcttgtctgaaatatagtgatgaaaattttcagACAATGGCTTGGATTCTTGATGAATACTCAAAATTCCATGGACATTCTCCTGCTGTTGTCACTGGAAAACCCATT
Basic information
species | Arabidopsis thaliana |
transcript | AT3G03910.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G03910.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os03g58040.2 (Oryza sativa), 3'ss of exon 3
---------gtttcgaaaacatgatcttgaagtcttcatcttgtattttacgtgt---------tgttcttgtctgaaatatagtgatgaaaattttcagACAATGGCTTGGATTCTTGATGAATACTCAAAATTCCATGGACATTCTCCTGCTGTTGTCACTGGAAAACCCATT
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gttattttcctttgcatatcctctcatttgagactttggtgagaaataggcatatgcatatgtttattctgatgtggcttgttttttttcatggatgtagACAATGGCGTGGATACTTGACGAATACTCAAAGTTTCATGGTTATTCACCTGCTGTGGTGACTGGAAAACCTGTT
upper sequence: AT3G03910.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G178415_T02 (Zea mays), 3'ss of exon 4
--------------------gtttcg-aaaacatgatcttgaagtct--tcatcttgtattttacgtgttgttcttgtctgaaatatagtgatga----aaattttcagACAATGGCTTGGATTCTTGATGAATACTCAAAATTCCATGGACATTCTCCTGCTGTTGTCACTGGAAAACCCATT
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gttattttcctttatgtatcatttcatgaaggactttcatgagaattagttatcaataaatatatgt-ttattctaatatggcctattttgtttgctttatggatgcagACAATGGCATGGATACTTGACGAATACTCAAAGTTCCATGGTTACTCACCTGCTGTTGTGACAGGAAAGCCTGTG
upper sequence: AT3G03910.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: EFJ36429 (Selaginella moellendorffii), 3'ss of exon 3
gtttcgaaaacatgatcttgaagtcttcat--cttgtattttacgtgttgttcttgtctgaaatatagtgatgaaaatttt---cagACAATGGCTTGGATTCTTGATGAATACTCAAAATTCCATGGACATTCTCCTGCTGTTGTCACTGGAAAACCCATT
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gtttttctctcttttctttggtttttcctctacttgtcctttcttttctttgcgaagttggattttcatgtttttgtttcttcacagACCATGGCTTGGATTCTTGACGAATACTCTAAGTTCCACGGGTATTCGCCAGCAATAGTAACTGGAAAGCCACTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catcttgtattttacgtgttgttcttgtctgaaatatagtgatgaaaattttcagACAATGGCTTGGATTCTTGATGAATACTCAAAATTCCATGGACATTCTCCTGCTGTTGTCACTGGAAAACCCATT
ttttc CT-rich tract
aaatatagtgatgaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttcgaaaacatgatcttgaagtcttcatcttgtattttacgtgttgttcttgtctgaaatatagtgatgaaaattttcagACAATGGCTTGGATTCTTGATGAATACTCAAAATTCCATGGACATTCTCCTGCTGTTGTCACTGGAAAACCCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT