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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaccacgtaccaattctttctattaatcctacacattctccaaattgtaatgtaagaagcttgttgtgtgtgagtgtgtgtttttccgcagAATATCGACAAAATCCCATATGTCGATTGCCCGGTTCTCATCATTCAT

Basic information

species Arabidopsis thaliana
transcript AT3G01690.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125289433|gb|EL303518.1|EL303518
EST:     ACCTACTGGTTCGACATCTACAAG                         AATATCGACAAAATCCCATATGTCGATTGCCCGGTTCTCATCATTCAT
genomic: ACCTACTGGTTCGACATCTACAAGgtagaccacg ... ttttccgcagAATATCGACAAAATCCCATATGTCGATTGCCCGGTTCTCATCATTCAT
EST: gi|125105028|gb|EL158924.1|EL158924
EST:     TAAGAGTTATGTATTCCGTCAAG-AAACCTACTGGTTCGACATCTACAAG                         AATATCGACAAAATCCCATATGTCGATTGCCCGGTTCTCATCA
genomic: TAAGAGTTATGTATTCCGTCAAGAAAACCTACTGGTTCGACATCTACAAGgtagaccacg ... ttttccgcagAATATCGACAAAATCCCATATGTCGATTGCCCGGTTCTCATCA
EST: gi|124902131|gb|EH976211.1|EH976211
EST:     CGACATCTACAAG                         AATATCGACAAAATCCCATATGTCGATTGCCCGGTTCTCATCATTCAT
genomic: CGACATCTACAAGgtagaccacg ... ttttccgcagAATATCGACAAAATCCCATATGTCGATTGCCCGGTTCTCATCATTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctccaaattgtaatgtaagaagcttgttgtgtgtgagtgtgtgtttttccgcagAATATCGACAAAATCCCATATGTCGATTGCCCGGTTCTCATCATTCAT
                                          tgtttttcc  CT-rich tract
     aaattgtaatgtaa  TA-rich tract