1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtatctaagaccttcctgtaacaatcaccctcgtttttatggtagacccctatgttcctctcttttatcgttgttttatttgagcttttttattttcttagattactgaagtttactgatatttctttcccatttcttcagGGGGGCCAAGTACCACCACCTCTAATGTCCTTTGAAGCTACTGGTTTTCCACCTGAGCTTCTGCGGGAG
species | Arabidopsis thaliana |
transcript | AT3G01540.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGAACTATCCCCTGAGGCCTATTCCCGCCGTCATGAAATTACTGTCAGT GGGGGCCAAGTACCACCACCTCTAATGTCCTTTGAAGCTACTGGTTTTCCAEST: gi|116438332|gb|EG480924.1|EG480924
genomic: GTGAACTATCCCCTGAGGCCTATTCCCGCCGTCATGAAATTACTGTCAGTgtaagtatct ... atttcttcagGGGGGCCAAGTACCACCACCTCTAATGTCCTTTGAAGCTACTGGTTTTCCA
EST: GTGAACTATCCCCTGAGGCCTATTCCCGCCGTCATGAAATTACTGTCAGT GGGGGCCAAGTACCACCACCTCTAATGTCCTTTGAAGCTACTGGTTTTCCAEST: gi|301501301|gb|HO206841.1|HO206841
genomic: GTGAACTATCCCCTGAGGCCTATTCCCGCCGTCATGAAATTACTGTCAGTgtaagtatct ... atttcttcagGGGGGCCAAGTACCACCACCTCTAATGTCCTTTGAAGCTACTGGTTTTCCA
EST: TGAACTATCCCCTGAGGCCTATTCCCGCCGTCATGAAAATTACTGTCAGT GGGGGCCAAGTACCACCACCTCTAATGTCCTTTGAAGCTACTGGTTTT
genomic: TGAACTATCCCCTGAGGCCTATTCCCGCCGTCATGAAA-TTACTGTCAGTgtaagtatct ... atttcttcagGGGGGCCAAGTACCACCACCTCTAATGTCCTTTGAAGCTACTGGTTTT
tttttattttcttagattactgaagtttactgatatttctttcccatttcttcagGGGGGCCAAGTACCACCACCTCTAATGTCCTTTGAAGCTACTGGTTTTCCACCTGAGCTTCTGCGGGAG
tactgat putative branch site (score: 2)
tatttctttcccattt CT-rich tract
attttcttagatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatctaagaccttcctgtaacaatcaccctcgtttttatggtagacccctatgttcctctcttttatcgttgttttatttgagcttttttattttcttagattactgaagtttactgatatttctttcccatttcttcagGGGGGCCAAGTACCACCACCTCTAATGTCCTTTGAAGCTACTGGTTTTCCACCTGAGCTTCTGCGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT