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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactgtgaaaagcggtttaaacagattctgttgagtctatactctatactgataaggtctaaaaatctgtttcttttcacgtctcacagGTGTGGTCACCAAACGTAATTACACTTGTGGAGGCATTATTGACAGTACTGCAATACGGATTGCTTCTAGTTCATGCGTACGCCCAAGACAAGCGATGGC

Basic information

species Arabidopsis thaliana
transcript AT2G47600.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G47600.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA10G02250.1 (Glycine max), 3'ss of exon 2
-----------gtaactgtgaaaagcggtttaaacagattctgttgagtctatactctatactgataaggtctaaaaatctgtttcttttcacgtctcacagGTGTGGTCACCAAACGTAATTACACTTGTGGAGGCATTATTGACAGTACTGCAATACGGATTGCTTCTAGTTCATGCGTACGCCCAAGACAAGCGATGGC
            |||||||   ||     | |    | || | || | |||  ||  | |  |  |    |     |||     ||     ||       |||| ||| | ||||||||  | || ||   ||||||||| ||||| ||||||||||||||||| ||  |   |||||| || || |||||||| || ||||
gcatatcttgtttaactgtattaatattatcactttgcttgt-ttaattcttcaccgt-tcttattcttcttgtggaatactcatcaagaaactgaatgtagGTATGGACTCCAAACGTTGTGACTCTCTGGGAGGCATTGTTGACTGTACTGCAATACGGATTACTATTGACTCATGCTTATGCTCAAGACAAACGTTGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125204328|gb|EL219282.1|EL219282
EST:     AGCTCGTATGGTCTTTTTGGGCTTACATCTGGCTATACATAATCCTCGAG                         GTGTGGTCAACCAAACGTAATTAACACTTGTGGAGGCATTATTGACAGTAC
genomic: AGCTCGTATGGTCTTTTTGGGCTTACATCTGGCTATACATAATCCTCGAGgtaactgtga ... cgtctcacagGTGTGGTCA-CCAAACGTAATTA-CACTTGTGGAGGCATTATTGACAGTAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctatactctatactgataaggtctaaaaatctgtttcttttcacgtctcacagGTGTGGTCACCAAACGTAATTACACTTGTGGAGGCATTATTGACAGTACTGCAATACGGATTGCTTCTAGTTCATGCGTACGCCCAAGACAAGCGATGGC
                                   tttcttttcacgtctc  CT-rich tract
                       tctaaaaat  TA-rich tract