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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaacactttgccaccttcctatctttatagactttcttgtaagtttccaatcatctgataaaaaaacatattctaaatgactgatgcagGTCCAAAATTTGATAGAAAGATGTCTCCAGTTGTACATGAGCAGAGATGAGGTCGTAAAGACACTCTTGACCCGTGCAAGGATTGACCCTGGTTTTACAA

Basic information

species Arabidopsis thaliana
transcript AT2G46420.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G46420.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv15s0046g00990.t01 (Vitis vinifera), 3'ss of exon 3
----------------------gtaa-gaacactttgccaccttcctatctttat-------agactttcttgtaagt---ttccaatcatctgataaaaaaacatattctaaatgactgatgcagGTCCAAAATTTGATAGAAAGATGTCTCCAGTTGTACATGAGCAGAGATGAGGTCGTAAAGACACTCTTGACCCGTGCAAGGATTGACCCTGGTTTTACAA
                       ||| | |   |||      ||  | | || ||       ||          || |   || |     || |    || ||  | | | |||    |  | |||||||| |||||||||||| | || || ||||||||||||| ||| ||||| || || ||||| |||||||  ||||||||||| || ||||| |||||||
gtaagacattatttgctttctactaatggatttttttttttttttttgtgttgatctccaaaagggagctcaacaaatctgtttcttatgtcgggcttaataatttttgcaaaaactttcctccagGTCCAGAATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAAGTGGTGAAGACCCTCTTGAGTCGTGCAAGGATAGATCCTGGATTTACAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgtaagtttccaatcatctgataaaaaaacatattctaaatgactgatgcagGTCCAAAATTTGATAGAAAGATGTCTCCAGTTGTACATGAGCAGAGATGAGGTCGTAAAGACACTCTTGACCCGTGCAAGGATTGACCCTGGTTTTACAA
                     tgataaaaaaacatat  TA-rich tract