1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttagtttcatttttttcacttgtttttgtcaacgagcattttcgattggagacgtttttgagatgagtttgtgtatggttttcgttaacttgcagGCTGTGAGAAGGGACAATAAGCAACGGTTTAGTCTCATCGATGAGAATGGAGAGCTCTTGATTCGCGCTAACCAAGGCCATTCGATCACG
species | Arabidopsis thaliana |
transcript | AT2G45330.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATTCAGTTAAAGTCACACACGATTGATGTAAATTAGAGAG GCTGTGAGAAGGGACAATAAGCAACGGTTTAGTCTCATCGATGAGAATGGAEST: gi|125222713|gb|EL236798.1|EL236798
genomic: TATTCAGTTAAAGTCACACACGATTGATG-AAATTAGAGAGgttagtttca ... taacttgcagGCTGTGAGAAGGGACAATAAGCAACGGTTTAGTCTCATCGATGAGAATGGA
EST: TATTCAGTTAAAGTCACACACGATTGATGAAATTAGAGAG GCTGTGAGAAGGGACAATAAGCAACGGTTTAGTCTCATCGATGEST: gi|19875319|gb|AU236150.1|AU236150
genomic: TATTCAGTTAAAGTCACACACGATTGATGAAATTAGAGAGgttagtttca ... taacttgcagGCTGTGAGAAGGGACAATAAGCAACGGTTTAGTCTCATCGATG
EST: CTTCTGCAAATATTCAGTTAAAGTCACACACGATTGATGAAATTAGAGAG GCTGTGAGAAGGGACAATAAGCAACGGNTTAGTCTCATCGATGAGAATGGAEST: gi|86024310|gb|DR320063.1|DR320063
genomic: CTTCTGCAAATATTCAGTTAAAGTCACACACGATTGATGAAATTAGAGAGgttagtttca ... taacttgcagGCTGTGAGAAGGGACAATAAGCAACGGTTTAGTCTCATCGATGAGAATGGA
EST: CTTCTGCAAATATTCAGTTAAAGTCACACACGATTGATGAAATTAGAGAG GCTGTGAGAAGGGACAATAAGCAACGGTTTAGTCTCATCGATGAGAATGGAEST: gi|86024311|gb|DR320064.1|DR320064
genomic: CTTCTGCAAATATTCAGTTAAAGTCACACACGATTGATGAAATTAGAGAGgttagtttca ... taacttgcagGCTGTGAGAAGGGACAATAAGCAACGGTTTAGTCTCATCGATGAGAATGGA
EST: CTTCTGCAAATATTCAGTTAAAGTCACACACGATTGATGAAATTAGAGAG GCTGTGAGAAGGGACAATAAGCAACGGTTTAGTCTCATCGATGAGAATGGA
genomic: CTTCTGCAAATATTCAGTTAAAGTCACACACGATTGATGAAATTAGAGAGgttagtttca ... taacttgcagGCTGTGAGAAGGGACAATAAGCAACGGTTTAGTCTCATCGATGAGAATGGA
ttcgattggagacgtttttgagatgagtttgtgtatggttttcgttaacttgcagGCTGTGAGAAGGGACAATAAGCAACGGTTTAGTCTCATCGATGAGAATGGAGAGCTCTTGATTCGCGCTAACCAAGGCCATTCGATCACG
cgttaac putative branch site (score: 3)
ttttcgtt CT-rich tract
tttttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtttcatttttttcacttgtttttgtcaacgagcattttcgattggagacgtttttgagatgagtttgtgtatggttttcgttaacttgcagGCTGTGAGAAGGGACAATAAGCAACGGTTTAGTCTCATCGATGAGAATGGAGAGCTCTTGATTCGCGCTAACCAAGGCCATTCGATCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT