1 5' 3' | 2 5' 3' | 3 5' 3' |
...attttgttattcaactattgacatgatataccaatcacatataagatgttcaaaaaatatgaaaatcttgactattgtttttttttcttcttattatcagTGCGGCATGTTTATATCGAGGAACTAACATAGTTTTTCGTATGGACGCTGGAGCAAATCCGTACTACATTTCATTTGTTGTTGAGTATGAAAACGGCGAT
species | Arabidopsis thaliana |
transcript | AT2G45110.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGTGTCAACTACAAACG TGCGGCATGTTTATATCGA-GAACTAACATAGTTTTTCGTATGGACGCTGGEST: gi|19876000|gb|AU236831.1|AU236831
genomic: CGTGTCAACTACAAACGgtaactatat ... ttattatcagTGCGGCATGTTTATATCGAGGAACTAACATAGTTTTTCGTATGGACGCTGG
EST: CAAGCCGATCAACTTTGATCCGCTGGNGTTATACGTGTCAACTACAAACG TGCGGCATGTTTATATCGAGGGAACTAACATA
genomic: CAAGCCGATCAACTTCGATCCGCTGGTGTTATACGTGTCAACTACAAACGgtaactatat ... ttattatcagTGCGGCATGTTTATATCGAGG-AACTAACATA
atgttcaaaaaatatgaaaatcttgactattgtttttttttcttcttattatcagTGCGGCATGTTTATATCGAGGAACTAACATAGTTTTTCGTATGGACGCTGGAGCAAATCCGTACTACATTTCATTTGTTGTTGAGTATGAAAACGGCGAT
tcttgac putative branch site (score: 3)
tcttgactattgtttt CT-rich tract
aaaaaatatgaaaatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttgttattcaactattgacatgatataccaatcacatataagatgttcaaaaaatatgaaaatcttgactattgtttttttttcttcttattatcagTGCGGCATGTTTATATCGAGGAACTAACATAGTTTTTCGTATGGACGCTGGAGCAAATCCGTACTACATTTCATTTGTTGTTGAGTATGAAAACGGCGAT
- - - - attcaac
- - - - - - - - - - - - - -ataccaa
- - - - - - - - - - - - - - - - - -cacatat
- - - - - - - - - - - - - - - - - - - - - - - - - caaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatc