Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtaccttcactcgttctctcaaacacatgaatattttcccatatctgagatcttggggatgtggttttcagtaatcttatgaatttatgcgtttcgatttcttctttatgttgatccattgtgcgttgtgaaactcgagatttattttgttttccactgacatatagGCAGGCAGTCCTTCCTAAACACTACTAAGTGGATCGATGAGGTTAGGACAGAACGTGGTAGTGATGTCATAGTCGTGCTTGTGGGAAACAAAACTGATCT

Basic information

species Arabidopsis thaliana
transcript AT2G44610.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124981030|gb|EL053926.1|EL053926
EST:     GAGCTATATCAGGGATTCCTCCGTTGCTGTTATCGTGTATGATGTTGCAA                         GCAGGCAGTCCTTCCTAAACACTACTAA
genomic: GAGCTATATCAGGGATTCCTCCGTTGCTGTTATTGTGTATGATGTTGCAAgtatgtgtac ... tgacatatagGCAGGCAGTCCTTCCTAAACACTACTAA
EST: gi|116467570|gb|EG510162.1|EG510162
EST:     GAGCTATATCAGGGATTCCTCCGTTGCTGTTATTGTGTATGATGTTGCAA                         GCAGGCAGTCCTTCCTAAACACTACTAAGTGGATCGATGAGGTTAGGACAG
genomic: GAGCTATATCAGGGATTCCTCCGTTGCTGTTATTGTGTATGATGTTGCAAgtatgtgtac ... tgacatatagGCAGGCAGTCCTTCCTAAACACTACTAAGTGGATCGATGAGGTTAGGACAG
EST: gi|124829919|gb|EH914485.1|EH914485
EST:     ATTCCTCCGTTGCTGTTTATTGTGTATGATGTTGCAA                         GCAGGCAGTCCTTCCTAAACACTACTAAGTGGATCGATGAGGTTAGGACAG
genomic: ATTCCTCCGTTGCTG-TTATTGTGTATGATGTTGCAAgtatgtgtac ... tgacatatagGCAGGCAGTCCTTCCTAAACACTACTAAGTGGATCGATGAGGTTAGGACAG
EST: gi|164190621|gb|ES125120.1|ES125120
EST:     GGATTCCTCCGTTGCTGTTATTGTGTATGATGTTGCAA                         GCAGGCAGTCCTTCCTAAACACTGCTAAGTGGATCGATGAGGTTAGGACAG
genomic: GGATTCCTCCGTTGCTGTTATTGTGTATGATGTTGCAAgtatgtgtac ... tgacatatagGCAGGCAGTCCTTCCTAAACACTACTAAGTGGATCGATGAGGTTAGGACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatccattgtgcgttgtgaaactcgagatttattttgttttccactgacatatagGCAGGCAGTCCTTCCTAAACACTACTAAGTGGATCGATGAGGTTAGGACAGAACGTGGTAGTGATGTCATAGTCGTGCTTGTGGGAAACAAAACTGATCT
                                          cactgac  putative branch site (score: 2)
                                ttttgttttccact  CT-rich tract
                         agatttattttgtttt  TA-rich tract