Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taactgctctccttttttatcgttctagtgtagtacaactagtaattaatgtatacttggtgccatgttttatcacttaactgtacttattctcaagcagGCCATATTAGCTTCTACTTTCCCGGGTCAGCGACAATATTCACAGGAGACCTGATATATAGCTTATCCTGTGGTACCCTTTCAGAAGGTACCCCTGAGCA

Basic information

species Arabidopsis thaliana
transcript AT2G43430.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G43430.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv05s0102g01180.t01 (Vitis vinifera), 3'ss of exon 6
---taactgctctcct--tttttatcgttctagtgtagtacaactagtaattaatgtatacttggtgccatgttttatcacttaactgtacttattctcaagcagGCCATATTAGCTTCTACTTTCCCGGGTCAGCGACAATATTCACAGGAGACCTGATATATAGCTTATCCTGTGGTACCCTTTCAGAAGGTACCCCTGAGCA
   ||  ||   ||    ||   || ||||     |  | |   |  | ||||||    | ||      || |  | |    ||  ||   ||| |  ||||||||||| ||||||||||||||||| || |||| | |||| || ||||| |||    | |  ||  |||| ||||| |  ||||  ||||| || ||||| ||
ttatatttggcttctagattcacatagttcccccttttt-cttttctttattaata---atttaacctaatttaattttgtgta-ttgattttaattgcaagcagGCCACATTAGCTTCTACTTTCCGGGATCAGGGGCAATTTTTACAGGGGACACTTTGTTCAGTCTATCATGTGGCAAACTTTTCGAAGGAACTCCTGAACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatgtatacttggtgccatgttttatcacttaactgtacttattctcaagcagGCCATATTAGCTTCTACTTTCCCGGGTCAGCGACAATATTCACAGGAGACCTGATATATAGCTTATCCTGTGGTACCCTTTCAGAAGGTACCCCTGAGCA
                             acttaac  putative branch site (score: 3)
                                        cttattctc  putative PPT
                   atgttttat  TA-rich tract