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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctcacggctctttcatcctgtcattagatgatgttttggttttggtttttggttaactttaggctaacacagcaacatcgttatgtcacagGCTGCATGGAGTATGCAAGGAGAATCCTCTCGCACCAGTTATTGGAAGACTTGGACTGCCCTTGTATCGTACTAGCGGTGACAATTCCGTCCTGTATGAT

Basic information

species Arabidopsis thaliana
transcript AT2G43020.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G43020.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S24_237V6.3 (Physcomitrella patens), 3'ss of exon 4
------------------------------------------------------------gtaatctcacggctct--ttcatcctgtcatt---agatgatgttttggttttggt-ttttggt-taactttaggctaacacagcaacatcgttatgtc-----------acagGCTGCATGGAGTATGCAAGGAGAATCCTCTCGCACCAGTTATTGGAAGACTTGGACTGCCCTTGTATCGTACTAGCGGTGACAATTCCGTCCTGTATGAT
                                                            |  ||    | | |||  ||  |  ||  |||   ||  | ||   ||   |   | |||| |      |||| | | |||  | |||  |||| || |             ||| | ||||||||||||||||| || ||||||||||| ||||| || |  ||  || |||| |||||||| ||  | || || ||||| ||  ||||||| 
gtgattatttagcgttcataaatctctttgaaactttgaatcgtgggaatcttggaaatagacattgatctggtctggttggtattgatatttggaggggctgcaatgacctgaatattttagcgccgttttacgatgacaacggaacgacgttttggctgtttgggggtgtagGTTACATGGAGTATGCAAGGACAACCCTCTCGCACCTGTTATCGGCAAGCTACGATTGCCTTTGTATCGAACATGTGGCGATAATTCAGTTTTGTATGAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttttggtttttggttaactttaggctaacacagcaacatcgttatgtcacagGCTGCATGGAGTATGCAAGGAGAATCCTCTCGCACCAGTTATTGGAAGACTTGGACTGCCCTTGTATCGTACTAGCGGTGACAATTCCGTCCTGTATGAT
                         ggctaac  putative branch site (score: 2)
                ttaacttta  TA-rich tract