1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatcatcctgtgacaagatgttcctgtttcttcgtgtattcagccatattcactgattatctactgaatcacagGGCTATTACAGGCGTGGTGCTGCGTATCTTGCCATGGGAAAATTTAAGGATGCCTTGAAGGACTTCCAACAG
species | Arabidopsis thaliana |
transcript | AT2G42810.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAATACAGGATGCATCGAAGGCCATTGAAGTTGATTCAAGATACTCTAAG GGCTATTACAGGCGTGGTGCTGCGTATCTEST: gi|86073690|gb|DR369447.1|DR369447
genomic: CAATACAGGATGCATCGAAGGCCATTGAAGTTGATTCAAGATACTCTAAGgtatcatcct ... tgaatcacagGGCTATTACAGGCGTGGTGCTGCGTATCT
EST: CAATACAGGATGCATCGAAGGCCATTGAAGTTGATTCAAGATACTATAAG GGCTATTACAGGCGTGGTGCTGCGTATCTTGCCEST: gi|86073689|gb|DR369446.1|DR369446
genomic: CAATACAGGATGCATCGAAGGCCATTGAAGTTGATTCAAGATACTCTAAGgtatcatcct ... tgaatcacagGGCTATTACAGGCGTGGTGCTGCGTATCTTGCC
EST: CAATACAGGATGCATCGAAGGCCATTGNAGTTGATTCAAGATACTCTAAN GGCTATTACAGGGCGGGGGTGCTGCGTATCTTGCCATGGGAAA
genomic: CAATACAGGATGCATCGAAGGCCATTGAAGTTGATTCAAGATACTCTAAGgtatcatcct ... tgaatcacagGGCTATTACAGG-CGTGG-TGCTGCGTATCTTGCCATGGGAAA
gttcctgtttcttcgtgtattcagccatattcactgattatctactgaatcacagGGCTATTACAGGCGTGGTGCTGCGTATCTTGCCATGGGAAAATTTAAGGATGCCTTGAAGGACTTCCAACAG
cactgat putative branch site (score: 3)
attatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcatcctgtgacaagatgttcctgtttcttcgtgtattcagccatattcactgattatctactgaatcacagGGCTATTACAGGCGTGGTGCTGCGTATCTTGCCATGGGAAAATTTAAGGATGCCTTGAAGGACTTCCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG