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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctaccaattacagagagtaatttttttactattacatagcatcgttcaaatatttactgttcttgggattactgcagGATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTG

Basic information

species Arabidopsis thaliana
transcript AT2G42770.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124973704|gb|EL047312.1|EL047312
EST:     TGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATG                         GATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTG
genomic: TGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATGgtgagctacc ... attactgcagGATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTG
EST: gi|47832267|gb|CK121951.1|CK121951
EST:     TGAGCTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATG                         GATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTG
genomic: TGAGCTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATGgtgagctacc ... attactgcagGATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTG
EST: gi|124918092|gb|EH991962.1|EH991962
EST:     CTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATG                         GATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTG
genomic: CTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATGgtgagctacc ... attactgcagGATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTG
EST: gi|86077698|gb|DR373455.1|DR373455
EST:     TGAGCTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATG                         GATTTCGCTTCT-GGTTCCCGTTAGCATACTTAACTTTTG
genomic: TGAGCTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATGgtgagctacc ... attactgcagGATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTG
EST: gi|86074713|gb|DR370470.1|DR370470
EST:     TGAGCTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATG                         GATTTCGCTTCT-GGTTCCCGTTAGCATACTTAACTTTTG
genomic: TGAGCTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATGgtgagctacc ... attactgcagGATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTG
EST: gi|124816753|gb|EH901619.1|EH901619
EST:     AAAGATGCTCTTCCTACGCTTCTTTATG                         GATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTG
genomic: AAAGATGCTCTTCCTACGCTTCTTTATGgtgagctacc ... attactgcagGATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttactattacatagcatcgttcaaatatttactgttcttgggattactgcagGATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTG
                      ttcaaatatttact  TA-rich tract