1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttgtttaacttttttagtgtcttgacattttggattccttgtgtgtgtgacttgactgatgtatttttttgtctcaaatgttttcagGATTCGTGATTGTTTGACGCAGTTATATGCAAAGGACATTACTCCTGATGACAAACAAGAACTCGATGAAGCTCTGCAACGAGAG
species | Arabidopsis thaliana |
transcript | AT2G42600.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTCATCCCACTCAATCTGTTCGTCGGTCTTTGCTCCAAAAGTTTGGAAG GATTCGTGATTGTTTGACGCAGTTATATGCAAAGGACATTACTCCTGATGAEST: gi|125237358|gb|EL251443.1|EL251443
genomic: GCTCATCCCACTCAATCTGTTCGTCGGTCTTTGCTCCAAAAGTTTGGAAGgtttgtttaa ... atgttttcagGATTCGTGATTGTTTGACGCAGTTATATGCAAAGGACATTACTCCTGATGA
EST: GCTCATCCCACTCAATCTGTTCGTCGGTCTTTGCTCCAAAAGTTTGGAAG GATTCGTGATTGTTTGACGCAGTTATAEST: gi|124790665|gb|EH880344.1|EH880344
genomic: GCTCATCCCACTCAATCTGTTCGTCGGTCTTTGCTCCAAAAGTTTGGAAGgtttgtttaa ... atgttttcagGATTCGTGATTGTTTGACGCAGTTATA
EST: GCNCATCCCACTCAATCTGTTCGTCGGTCTTTGCTCCAAAAGTTTGGAAG GATTCGTGATTGTTTGACGCAGTTATAEST: gi|116477131|gb|EG519723.1|EG519723
genomic: GCTCATCCCACTCAATCTGTTCGTCGGTCTTTGCTCCAAAAGTTTGGAAGgtttgtttaa ... atgttttcagGATTCGTGATTGTTTGACGCAGTTATA
EST: GCTCATCCCACTCAATCTGTTCGTCGGTCTTTGCTCCAAAAGTTTGGAAG GATTCGTGATTGTTTGACGCAGTTATATGCAAAGGACATTACTCCTGATGAEST: gi|116416335|gb|EG458927.1|EG458927
genomic: GCTCATCCCACTCAATCTGTTCGTCGGTCTTTGCTCCAAAAGTTTGGAAGgtttgtttaa ... atgttttcagGATTCGTGATTGTTTGACGCAGTTATATGCAAAGGACATTACTCCTGATGA
EST: GCTCATCCCACTCAATCTGTTCGTCGGTCTTTGCTCCAAAAGTTTGGAAG GATTCGTGATTGTTTGACGCAGTTATATGCAAAGGACATTACTCCCTGATGEST: gi|125003247|gb|EL075516.1|EL075516
genomic: GCTCATCCCACTCAATCTGTTCGTCGGTCTTTGCTCCAAAAGTTTGGAAGgtttgtttaa ... atgttttcagGATTCGTGATTGTTTGACGCAGTTATATGCAAAGGACATTACT-CCTGATG
EST: ATCCCACTCAATCTGTTCGTCGGTCTTTGCTCCAAAAGTTTGGAAG GATTCGTGATTGTTTGACGCAGTTATATGCAAAGGACATTTACTCCTGATGEST: gi|124817621|gb|EH902487.1|EH902487
genomic: ATCCCACTCAATCTGTTCGTCGGTCTTTGCTCCAAAAGTTTGGAAGgtttgtttaa ... atgttttcagGATTCGTGATTGTTTGACGCAGTTATATGCAAAGGACATT-ACTCCTGATG
EST: TCCCACTCAATCTGTTCGTCGGTCTTTGCTCCAAAAGTTTGGAAG GATTCGTGATTGTTTGACGCAGTTATATGCAAAGGACATTACTCCTGATGA
genomic: TCCCACTCAATCTGTTCGTCGGTCTTTGCTCCAAAAGTTTGGAAGgtttgtttaa ... atgttttcagGATTCGTGATTGTTTGACGCAGTTATATGCAAAGGACATTACTCCTGATGA
gattccttgtgtgtgtgacttgactgatgtatttttttgtctcaaatgttttcagGATTCGTGATTGTTTGACGCAGTTATATGCAAAGGACATTACTCCTGATGACAAACAAGAACTCGATGAAGCTCTGCAACGAGAG
gactgat putative branch site (score: 3)
tgttttc putative PPT
tgatgtattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttaacttttttagtgtcttgacattttggattccttgtgtgtgtgacttgactgatgtatttttttgtctcaaatgttttcagGATTCGTGATTGTTTGACGCAGTTATATGCAAAGGACATTACTCCTGATGACAAACAAGAACTCGATGAAGCTCTGCAACGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC