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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtggccaagaaagtctatatctaagaaataatgttcacactgtgtatctagtaaaatcaataattatgttatttattttttcttctatgtttgctttagTTGTCATCTTGTGCTGGGGGAACTTGGATCAGCAGTGCAGTATTTTAATAAATGCATGAAATCCACCTCTAGTGTCTGCTTGGATCGACGAACTACTATA

Basic information

species Arabidopsis thaliana
transcript AT2G41520.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116471348|gb|EG513940.1|EG513940
EST:     GCTGCCTCACTTGATCCTAGCTACATTAAAGCGTATATGAGAGCTGCAAA                         TTGTCATCTTGTGCTGGGGGAACTTGGATCAGCAGTGCAGTATTTTAATAA
genomic: GCTGCCTCACTTGATCCTAGCTACATTAAAGCGTATATGAGAGCTGCAAAgtaagtttaa ... tttgctttagTTGTCATCTTGTGCTGGGGGAACTTGGATCAGCAGTGCAGTATTTTAATAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctagtaaaatcaataattatgttatttattttttcttctatgtttgctttagTTGTCATCTTGTGCTGGGGGAACTTGGATCAGCAGTGCAGTATTTTAATAAATGCATGAAATCCACCTCTAGTGTCTGCTTGGATCGACGAACTACTATA
                               ttttttcttctatgtt  CT-rich tract
     agtaaaatcaataatt  TA-rich tract