Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgaatcttcagaaccctagtttcctcgatcttgttatcttaccttgagtagcttagctaactctgaatttcttaaatccttttgcagCTTCCAACACAATTCTACATGGCACTG

Basic information

species Arabidopsis thaliana
transcript AT2G41050.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124996757|gb|EL069026.1|EL069026
EST:     GGGGTATATCTTCAATCTTCTTGGCTGCTTGATGGAACCAGCTACT                         CTTCCAACACAATTCTACATGG
genomic: GGGG-ATATCTTCAATCTTCTTGGCTGCTTGATGGAACCAGCTACTgtgagtgaat ... ccttttgcagCTTCCAACACAATTCTACATGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatcttaccttgagtagcttagctaactctgaatttcttaaatccttttgcagCTTCCAACACAATTCTACATGGCACTG
                      agctaac  putative branch site (score: 2)
                                            tccttttgc  putative PPT
                               tgaatttcttaaat  TA-rich tract