1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagattaccctttttttaactcgtgtataaatgtagattgaggtagtttgaaattggtattgttgagtgatggaaaccagttggattgaaaaattggaacagGGGTTTTAACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCTATCTATGACTCAGATGTCAACCCTCAAGAATCTCTCACCAATTCGTACAA
species | Arabidopsis thaliana |
transcript | AT2G40600.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGTTCGTCCTGGAGTCCGTTGTCCAACTGGAGAAGCAAGAATTACTCC GGGTTTTAACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCTATCTAEST: gi|124728727|gb|EH820129.1|EH820129
genomic: GAAGTTCGTCCTGGAGTCCGTTGTCCAACTGGAGAAGCAAGAATTACTCCgtgagattac ... attggaacagGGGTTTTAACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCTATCTA
EST: GGAGTCCGTTGTCCAACTGGAGAAGCAAGAATTACTCC GGGTTTTAACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCTATCTAEST: gi|124741014|gb|EH832176.1|EH832176
genomic: GGAGTCCGTTGTCCAACTGGAGAAGCAAGAATTACTCCgtgagattac ... attggaacagGGGTTTTAACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCTATCTA
EST: TCCGTTGTCCAACTGGAGAAGCAAGAATTACTCC GGGTTTTAACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCTATCTAEST: gi|124817025|gb|EH901891.1|EH901891
genomic: TCCGTTGTCCAACTGGAGAAGCAAGAATTACTCCgtgagattac ... attggaacagGGGTTTTAACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCTATCTA
EST: CCTGGAGTCCGTTGTCCAACTGGAGAAGCAAGAATTACTCC GGGTTTTAACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCTATCTA
genomic: CCTGGAGTCCGTTGTCCAACTGGAGAAGCAAGAATTACTCCgtgagattac ... attggaacagGGGTTTTAACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCTATCTA
ttgaaattggtattgttgagtgatggaaaccagttggattgaaaaattggaacagGGGTTTTAACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCTATCTATGACTCAGATGTCAACCCTCAAGAATCTCTCACCAATTCGTACAA
attgaaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagattaccctttttttaactcgtgtataaatgtagattgaggtagtttgaaattggtattgttgagtgatggaaaccagttggattgaaaaattggaacagGGGTTTTAACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCTATCTATGACTCAGATGTCAACCCTCAAGAATCTCTCACCAATTCGTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG