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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcatttcattcctctcttttatgtttctttgacctttgttataattctacattataaagtttggatttttagactattggtattgagaaagtttggatttttcgactattggcattgaagtttactgagatctgtaacttgattgaatcatgtaattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCACTCTCATGTCGTTAGAGTCCGTTCCCGCACCAACCGCAGGGT

Basic information

species Arabidopsis thaliana
transcript AT2G40510.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G40510.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA14G38950.1 (Glycine max), 3'ss of exon 3
gtatcatttcattcctctcttttatgtttctttgacctttgttataattctacattataaagtttggatttttagactattggtattgagaaagtttggatttttcgactattggcattgaagtttactgagatctgtaacttgattgaatcatgtaattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCACTCTCATGTCGTTAGAGTCCGTTCCCGCACCAACCGCAGGGT
                                                  || ||| |    |  |  || ||    ||||  | || || ||      ||||  |  || ||    |||   |||| |    | |     ||  || |||  | ||  || ||| ||| ||| | || || || ||||  |||| ||| |||||||| ||||||||||||||||||||||| || || || || ||||||||| || | |||  
-------------------------------------------------gta-attttcttatccg--ttatttatttatttatttttaggaaa-----atttcacatctgtttatgttg---tttatttgttttt-----ttttttaaattgtttatgtg-cagAATATACACTTCCAAAACTCTATGTGAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCATGTTGTGAGGGTTCGATCCCGCACCGACAGGAGGAA

upper sequence: AT2G40510.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA17G18200.1 (Glycine max), 3'ss of exon 3
---------gtatcatttcattcctctctttta--tgtttctttgacctttgttataattctacattataaagtttggatttttagact-attggtattga-----gaaagtttggatttttcgactattggcattg----aagtttactgagatctgtaacttgattgaatcatgtaattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCACTCTCATGTCGTTAGAGTCCGTTCCCGCACCAACCGCAGGGT
          | |  ||  |||   ||  || |   |    ||| ||   |||  |  || |  ||    || | | | || ||||  |  || | | ||      ||   |||| |  | ||     |     |||    |||| |  |    |  ||   ||  || |||  | | |||   ||  |||||  | ||||| || ||||  |||| ||| |||||||| ||||||||||||||||||||||| || || || || ||||||||  || | |||  
gtaataataattttcttatatttaccttcttaaaaggaaaatttcacacctgt-gttgttttttatcggcaaatgtagtttgttagttttgttagaaatgttgcttgaggatttgaacctctccctcctccctcttgttagaagtgttatttatttcgttgttt--tttaattgt-tgatttgtagAGTACACGCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCATGTTGTGAGGGTTCGATCCCGCACTGACAGGAGGAA

upper sequence: AT2G40510.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA04G39940.1 (Glycine max), 3'ss of exon 3
gtatcatttcattcctctcttttatgtttctttgacctttgttataattctacattataaagtttggatttttagactattggtattgagaaagtttggatttttcgactattggcattgaagtttactgagatctgtaacttgattgaatcatgtaattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCACTCTCATGTCGTTAGAGTCCGTTCCCGCACCAACCGCAGGGT
                                                                 | | ||||   ||  |  | ||        ||   |||||    | || |||   || ||    |   | | ||  | | ||  |   ||| |||   || ||||||  | |||||||| ||||  |||| ||| || ||||| ||||||||||||||||||||||| || || || || ||||||||  |  | ||   
-----------------------------------------------------------------gtaattttcttcttcttttctttt-----cttttcttttttctttttttgcaggaaaattccacgtcttatttatttggtttttaaattgttatttgtagAATACACGCTTCCGAAGCTGTATGTGAAGATGCAGTATTGTGTTTCCTGTGCTATCCACTCTCATGTTGTGAGGGTTCGATCCCGCACTGATAGGAGAAA

upper sequence: AT2G40510.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA06G14950.1 (Glycine max), 3'ss of exon 3
gtatcatttcattcctctcttttatgtttctttgacctttgttataattctacattataaagtttggatttttagactattggtattgagaaagtttggatttttcgactattggcattgaagtttactgagatctgtaacttgattgaatcatgtaattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCACTCTCATGTCGTTAGAGTCCGTTCCCGCACCAACCGCAGGGT
                                        || ||  |||| | |  | |  |||   ||||  |  | || ||  |  || | ||     |      |||||    |||   |||  ||| || |||                 |||||   || ||||||  | |||||||| ||||  |||| ||| || ||||| ||||||||||||||||||||||| || || || || ||||||||  |  | ||   
----------------------------------------gtaatt-ttcttcttctttacctttcttttttctgtttttttgttgtaggagaattccacgtc-----ctatttattttg---ttttttga-atttgt-----------------taatttgtagAATACACGCTTCCGAAGCTTTATGTGAAGATGCAGTATTGTGTTTCCTGTGCTATCCACTCTCATGTTGTGAGGGTTCGATCCCGCACTGATAGGAGAAA

upper sequence: AT2G40510.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA05G21370.1 (Glycine max), 3'ss of exon 3
gtatcatttcattcctctcttttatgtttctttgacctttgttataattctacattataaagtttggatttttagactattggtattgagaaagtttggatttttcgactattggcattgaagtttactgagatctgtaact-tgattgaatcatgtaattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCACTCTCATGTCGTTAGAGTCCGTTCCCGCACCAACCGCAGGGT
                                                                 | | |  ||   |  |   ||| |      |  | |||||    | || | |  | |   | || | | ||||     |  || |||  | |||||   || ||||||  | ||||| |||||||  |||| ||| |||||||| |||||||||||||| |||||||| || || || || ||||||||  |  | |||  
-----------------------------------------------------------------gtaataataattttcttacattcaccttactctgttttttt--tttttcgtagaggaaact-ctcacacctgttttggttttttaattgt-taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGCTATCCATTCTCATGTTGTGAGGGTTCGATCCCGCACTGATAGGAGGAA

upper sequence: AT2G40510.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA02G40660.1 (Glycine max), 3'ss of exon 3
gtatcatttcattcctctcttttatgtttctttgacctttgttataattctacattataaagtttggatttttagactattggtattgagaaagtttggatttttcgactattggcattgaagtttactgagatctgtaacttgattgaatcatgtaattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCACTCTCATGTCGTTAGAGTCCGTTCCCGCACCAACCGCAGGGT
                                                                |   ||| ||     ||  | ||   |        ||||  |  || ||    ||    |||| |   || |     || |   ||  || || ||  ||| ||| ||  | ||||| || ||||  |||| ||| |||||||| || |||||||||||||||||||| || || || || ||||||||  || | |||  
---------------------------------------------------------------gtaactttctaattcgttatttttttcatga---aaatttcgcatctgtttatgtta---tttatttgtattt-----ttaaaaaaaatat-tattttgcagAATATACTCTTCCGAAACTCTATGTGAAGATGCAGTACTGTGTTTCTTGTGCTATCCACTCTCATGTTGTGAGGGTTCGATCCCGCACTGACAGGAGGAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86036205|gb|DR331958.1|DR331958
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|164155040|gb|ES191364.1|ES191364
EST:     GAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: GAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|164075227|gb|ES034599.1|ES034599
EST:     TGTGGAGCAGGCTGATATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGA
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGA
EST: gi|47830262|gb|CK119946.1|CK119946
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|86036211|gb|DR331964.1|DR331964
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|86036204|gb|DR331957.1|DR331957
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|164014152|gb|ES116610.1|ES116610
EST:     CTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGT
genomic: CTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGT
EST: gi|125170231|gb|EL193822.1|EL193822
EST:     TATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGT
genomic: TATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACA-TTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGT
EST: gi|86036199|gb|DR331952.1|DR331952
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|124856553|gb|EH940990.1|EH940990
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTG
EST: gi|86036208|gb|DR331961.1|DR331961
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|164009050|gb|ES076332.1|ES076332
EST:     GATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: GATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|125136640|gb|EL176670.1|EL176670
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCG
EST: gi|47828170|gb|CK117854.1|CK117854
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|86036202|gb|DR331955.1|DR331955
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|47831156|gb|CK120840.1|CK120840
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|164113468|gb|ES063720.1|ES063720
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATG
EST: gi|86036210|gb|DR331963.1|DR331963
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|86036200|gb|DR331953.1|DR331953
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|86078577|gb|DR374334.1|DR374334
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|125055340|gb|EL125611.1|EL125611
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCCAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATAT
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATAT
EST: gi|47831171|gb|CK120855.1|CK120855
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|86036209|gb|DR331962.1|DR331962
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|164022803|gb|ES146969.1|ES146969
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGAC
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGAC
EST: gi|125188314|gb|EL203268.1|EL203268
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGAC
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGAC
EST: gi|86036201|gb|DR331954.1|DR331954
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attggcattgaagtttactgagatctgtaacttgattgaatcatgtaattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCACTCTCATGTCGTTAGAGTCCGTTCCCGCACCAACCGCAGGGT
                                          atgtaatt  TA-rich tract