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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttcttttgttccattctttttcctcttagcccatttgcttcaaggttccaatgatcattatggtttaatttgttagGTGGGAAACCGTTGTTGGAGCTCAATAGGGTACTTAGGCCAGGAGGTTTCTTCATATGGTCTGCAACACCAGTCTATCGAGATAATGACAGAGATAGCAG

Basic information

species Arabidopsis thaliana
transcript AT2G40280.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125201429|gb|EL216383.1|EL216383
EST:     AGAGTCCATTGGGATGCTGATG                         GTGGGAAACCGTTGTTGGAGCTCAATAGGGTACTTAGGCCAGGAGGTTTCT
genomic: AGAGTCCATTGGGATGCTGATGgtatttcttt ... aatttgttagGTGGGAAACCGTTGTTGGAGCTCAATAGGGTACTTAGGCCAGGAGGTTTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctcttagcccatttgcttcaaggttccaatgatcattatggtttaatttgttagGTGGGAAACCGTTGTTGGAGCTCAATAGGGTACTTAGGCCAGGAGGTTTCTTCATATGGTCTGCAACACCAGTCTATCGAGATAATGACAGAGATAGCAG
                                         gtttaat  putative branch site (score: 4)
                                   attatggtttaattt  TA-rich tract