1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcactctcatttgttttgctactgttcaaacatgtatgtttagctcatcatttggtgctcctctttggaaaaatcttaaaatctgatggttgatacgcagGGATCATTCACCAGCACTGGTTTGGTGGTATCTTCAAAGTTGCCCAGATTCTCTGATCAGTACACTCTCACCATCGACAGTGCTGATCCAAAATCAATCT
species | Arabidopsis thaliana |
transcript | AT2G39960.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCTGTACACTAAGGAGAAGAATGCGATTTTGTTCACCTATCCTCCTGAG GGATCATTCACCAGCACTGGTTTGGTGGTATCTTCAAAGTTGCCCAGATTCEST: gi|86023935|gb|DR319688.1|DR319688
genomic: TTCTGTACACTAAGGAGAAGAATGCGATTTTGTTCACCTATCCTCCTGAGgtttggtctc ... tgatacgcagGGATCATTCACCAGCACTGGTTTGGTGGTATCTTCAAAGTTGCCCAGATTC
EST: TTCTGTACACTAAGGAGAAGAATGCGATTTTGTTCACCTATCCTCCTGAG GGATCATTCACCAGCACTGGTTTGGEST: gi|86023936|gb|DR319689.1|DR319689
genomic: TTCTGTACACTAAGGAGAAGAATGCGATTTTGTTCACCTATCCTCCTGAGgtttggtctc ... tgatacgcagGGATCATTCACCAGCACTGGTTTGG
EST: TTCTGTACACTAAGGAGAAGAATGCGATTTTGTTCACCTATCCTCCTGAG GGATCATTCACCAGCAATGGTTTGGTGGTATCTTCAAAGTTGCCCAGATTCEST: gi|86076622|gb|DR372379.1|DR372379
genomic: TTCTGTACACTAAGGAGAAGAATGCGATTTTGTTCACCTATCCTCCTGAGgtttggtctc ... tgatacgcagGGATCATTCACCAGCACTGGTTTGGTGGTATCTTCAAAGTTGCCCAGATTC
EST: TTCTGTACACTAAGGAGAAGAATGCGATTTTGTTCACCTATCCTCCTGAG GGATCATTCACCAGCACTGGTTTGGTGGTATCTTCAAAGTTGCCCAGATTCEST: gi|86023930|gb|DR319683.1|DR319683
genomic: TTCTGTACACTAAGGAGAAGAATGCGATTTTGTTCACCTATCCTCCTGAGgtttggtctc ... tgatacgcagGGATCATTCACCAGCACTGGTTTGGTGGTATCTTCAAAGTTGCCCAGATTC
EST: TTCTGTACACTAAGGAGAAGAATGCGATTTTGTTCACCTATCCTCCTGAG GGATCATTCACCAGCACTGGTTTGGTGGTATCTTCAAAGTTGCCCAGATTCEST: gi|124902647|gb|EH976727.1|EH976727
genomic: TTCTGTACACTAAGGAGAAGAATGCGATTTTGTTCACCTATCCTCCTGAGgtttggtctc ... tgatacgcagGGATCATTCACCAGCACTGGTTTGGTGGTATCTTCAAAGTTGCCCAGATTC
EST: GTTCACCTATCCTCCTGAG GGATCATTCACCAGCACTGGTTTGGTGGTATCTTCAAAGTTGCCCAGATTCEST: gi|125092372|gb|EL150195.1|EL150195
genomic: GTTCACCTATCCTCCTGAGgtttggtctc ... tgatacgcagGGATCATTCACCAGCACTGGTTTGGTGGTATCTTCAAAGTTGCCCAGATTC
EST: ATGCGATTTTGTTCACCTATCCTCCTGAG GGATCATTCACCAGCACTGGTTTGGTGGTATCTTCAAAGTTGCCCAGATTCEST: gi|86023932|gb|DR319685.1|DR319685
genomic: ATGCGATTTTGTTCACCTATCCTCCTGAGgtttggtctc ... tgatacgcagGGATCATTCACCAGCACTGGTTTGGTGGTATCTTCAAAGTTGCCCAGATTC
EST: TCTGTACACTAAGGAGAAGAATGCGATTTTGTTCACCTATCCCTCCTGAG GGATCATTCACCAGCACTGGTTTGGTGGTATCEST: gi|124884520|gb|EH963422.1|EH963422
genomic: TCTGTACACTAAGGAGAAGAATGCGATTTTGTTCACCTATCC-TCCTGAGgtttggtctc ... tgatacgcagGGATCATTCACCAGCACTGGTTTGGTGGTATC
EST: TTCTGTACACTAAGGAGAAGAATGCGATTTTGTTCACCTATCCTCCTGAG GGATCATTCACCAGCACTGEST: gi|86023937|gb|DR319690.1|DR319690
genomic: TTCTGTACACTAAGGAGAAGAATGCGATTTTGTTCACCTATCCTCCTGAGgtttggtctc ... tgatacgcagGGATCATTCACCAGCACTG
EST: TTCTGTACACTAAGGAGAAGAATGCGATTTTGTTCACCTATCCTCCTGAG GGATCATTCACCAGCACTGGTTTGGTGGTATCTTCAAAGTTGCCCAGATTC
genomic: TTCTGTACACTAAGGAGAAGAATGCGATTTTGTTCACCTATCCTCCTGAGgtttggtctc ... tgatacgcagGGATCATTCACCAGCACTGGTTTGGTGGTATCTTCAAAGTTGCCCAGATTC
catcatttggtgctcctctttggaaaaatcttaaaatctgatggttgatacgcagGGATCATTCACCAGCACTGGTTTGGTGGTATCTTCAAAGTTGCCCAGATTCTCTGATCAGTACACTCTCACCATCGACAGTGCTGATCCAAAATCAATCT
aaaaatcttaaaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcactctcatttgttttgctactgttcaaacatgtatgtttagctcatcatttggtgctcctctttggaaaaatcttaaaatctgatggttgatacgcagGGATCATTCACCAGCACTGGTTTGGTGGTATCTTCAAAGTTGCCCAGATTCTCTGATCAGTACACTCTCACCATCGACAGTGCTGATCCAAAATCAATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
-cactctc
- - - - - -tgttttg
- - - - - - - - - - - - -tcaaaca
- - - - - - - - - - - - - - - - - - tgtttag
- - - - - - - - - - - - - - - - - - - - - -ctcatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaat