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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaataaaagaccaaaccagctctcttaatctcttctctgttgttaccttcattggaatgatctctctttttatcagGTAGGAAGGCTTATCATCTTACATGGGGATTGCAATATGTTAATCTTTTCATGATTAATTGTGGATTCATTATCCTAGCTGGTTCCGCCTTAAAG

Basic information

species Arabidopsis thaliana
transcript AT2G39890.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152035994|gb|AU237074.2|AU237074
EST:     TGGTGGCAGAAGACACATTCGCTATAGAGACCTTGCTGGATTCATTTACG                         GTAGGAAGGCTTATCATCTTACATGGGGATTGCAATATGTTAATCTTTTCA
genomic: TGGTGGCAGAAGACACATTCGCTATAGAGACCTTGCTGGATTCATTTACGgtaaataaaa ... tttttatcagGTAGGAAGGCTTATCATCTTACATGGGGATTGCAATATGTTAATCTTTTCA
EST: gi|124987460|gb|EL059916.1|EL059916
EST:     TGGTGGCAGAAGACACATTCGCTATAGAGACCTTGCTGGATTCATTTACG                         GTAGGAAGGCTTATC
genomic: TGGTGGCAGAAGACACATTCGCTATAGAGACCTTGCTGGATTCATTTACGgtaaataaaa ... tttttatcagGTAGGAAGGCTTATC
EST: gi|116479428|gb|EG522020.1|EG522020
EST:     TGGTGGCAGAAGACACATTCGCTATAGAGACCTTGCTGGATTCATTTACG                         GTAGGAAGGCTTATCATCTTACATGGGGATTGCAATATGTTAATCTTTTCA
genomic: TGGTGGCAGAAGACACATTCGCTATAGAGACCTTGCTGGATTCATTTACGgtaaataaaa ... tttttatcagGTAGGAAGGCTTATCATCTTACATGGGGATTGCAATATGTTAATCTTTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttaatctcttctctgttgttaccttcattggaatgatctctctttttatcagGTAGGAAGGCTTATCATCTTACATGGGGATTGCAATATGTTAATCTTTTCATGATTAATTGTGGATTCATTATCCTAGCTGGTTCCGCCTTAAAG
 tcttaat  putative branch site (score: 3)
                                       tctctctttttatc  putative PPT
                                           tctttttat  TA-rich tract