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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttctatctactttcatgaattaaagtatttgttagcaaaaaaaattgaagttggttaaaaacgttatttctattgcattagagaatgaattttaattatgaaataaatcgtgcagGGTATGGTTGGTCTATGGATAACAACCGAGATTTTCCAAGGCCTTTTCACGGTGGCTTGAATCCATCATCTTTCATTCCACCTTATGAGCCTTCCTATCA

Basic information

species Arabidopsis thaliana
transcript AT2G39830.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116398788|gb|EG441380.1|EG441380
EST:     TCTAGCTGAC-ACACGAAGCGCCCACATG                         GGTATGGTTGGTCTATGGATAACAACCGAGATTTTCCAAGGCCTTTTCACG
genomic: TCTAGCTGACAACACGAAGCGCCCACATGgtatttctat ... aatcgtgcagGGTATGGTTGGTCTATGGATAACAACCGAGATTTTCCAAGGCCTTTTCACG
EST: gi|116398790|gb|EG441382.1|EG441382
EST:     TCTAGCTGACAACACGAAGCGCCCACATG                         GGTATGGTTGGTCTATGGATAACAACCGAGATTTTCCAAGGCCTTTTCACG
genomic: TCTAGCTGACAACACGAAGCGCCCACATGgtatttctat ... aatcgtgcagGGTATGGTTGGTCTATGGATAACAACCGAGATTTTCCAAGGCCTTTTCACG
EST: gi|116398782|gb|EG441374.1|EG441374
EST:     CGACCGTTCAATTTCACTTTCTCTAGCTGACAACACGAAGCGCCCACATG                         GGGTATGGTTGGTCTATGGATAACAACCGAGATTTTCCAAGGCCTTTTCAC
genomic: CGACCGTTCAATTTCACTTTCTCTAGCTGACAACACGAAGCGCCCACATGgtatttctat ... aatcgtgcagGG-TATGGTTGGTCTATGGATAACAACCGAGATTTTCCAAGGCCTTTTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgttatttctattgcattagagaatgaattttaattatgaaataaatcgtgcagGGTATGGTTGGTCTATGGATAACAACCGAGATTTTCCAAGGCCTTTTCACGGTGGCTTGAATCCATCATCTTTCATTCCACCTTATGAGCCTTCCTATCA
                             ttttaat  putative branch site (score: 3)
                attagagaatgaattt  TA-rich tract