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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccttttagctgttaatatttttatgtttcttaagactgtatatttgtgcaccgtaaggtctgtctatctttaatattggccctcagATAATCTTGAAACAAAAGAGATGCAAGCGTGGTTAGATAAACTCCTAAGGTGTTCCAAACAGGTGGCTGGCATATGTAGTGTGCTCGAAGTTATGGAATC

Basic information

species Arabidopsis thaliana
transcript AT2G39810.1
intron # 3
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116394345|gb|EG436937.1|EG436937
EST:     TTGGGTCAAGCGTACATTCCGGAGCACCTTAGCTGAACT-CAAGAAATCT                         ATAATCTTGAAACAAAAGAGATGCAAGCGTGGGTAGATAAACTCCT
genomic: TTGGGTCAAGCGTACATTCCGGAGCACCTTAGCTGAACTTCAAGAAATCTgtatcctttt ... tggccctcagATAATCTTGAAACAAAAGAGATGCAAGCGTGGTTAGATAAACTCCT
EST: gi|116394342|gb|EG436934.1|EG436934
EST:     TTGGGTCAAGCGTACATTCCGGAGCACCTTAGCTGAACTTCAAGAAATCT                         ATAATCTTGAAACAAAAGAGATGCAAGCGTGGTTAGATAAACTCCTAAGGT
genomic: TTGGGTCAAGCGTACATTCCGGAGCACCTTAGCTGAACTTCAAGAAATCTgtatcctttt ... tggccctcagATAATCTTGAAACAAAAGAGATGCAAGCGTGGTTAGATAAACTCCTAAGGT
EST: gi|116394352|gb|EG436944.1|EG436944
EST:     TTGGGTCAAGCGTACATTCCGGAGCACCTTAGCTGAACTTCAAGAAATCT                         ATAATCTTGAAACAAAAGAGATGCAAGCGTGGTTAGATAAACTCCTAAGGT
genomic: TTGGGTCAAGCGTACATTCCGGAGCACCTTAGCTGAACTTCAAGAAATCTgtatcctttt ... tggccctcagATAATCTTGAAACAAAAGAGATGCAAGCGTGGTTAGATAAACTCCTAAGGT
EST: gi|116394338|gb|EG436930.1|EG436930
EST:     TTGGGTCAAGCGTACATTCCGGAGCACCTTAGCTGAACTTCAAGAAATCT                         ATAATCTTGAAACAAAAGAGATGCAAGCGTGGTTAGATAAACTCCTAAGGT
genomic: TTGGGTCAAGCGTACATTCCGGAGCACCTTAGCTGAACTTCAAGAAATCTgtatcctttt ... tggccctcagATAATCTTGAAACAAAAGAGATGCAAGCGTGGTTAGATAAACTCCTAAGGT
EST: gi|116394335|gb|EG436927.1|EG436927
EST:     TAGCTGAACTCCAAGAAATCT                         ATAATCTTGAAACAAAAGAGATGCAAGCGTGGTTAGATAAACTCCTAAGGT
genomic: TAGCTGAACTTCAAGAAATCTgtatcctttt ... tggccctcagATAATCTTGAAACAAAAGAGATGCAAGCGTGGTTAGATAAACTCCTAAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagactgtatatttgtgcaccgtaaggtctgtctatctttaatattggccctcagATAATCTTGAAACAAAAGAGATGCAAGCGTGGTTAGATAAACTCCTAAGGTGTTCCAAACAGGTGGCTGGCATATGTAGTGTGCTCGAAGTTATGGAATC
 ctccttgac  putative branch site 
                                                ccctc  putative PPT
                               tctatctttaatatt  TA-rich tract