1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaaaatacttcttcgatctttttccatgattcaaattctcgtagaattaacaatgtttatatgtttttcctcgttcacagACTCAACCAGTGGAGGAATTCTACAAGAAACGCGGGAAGCTGTTGGAATTTGAATTGCCCGGTGGAATCCCAGAGTCATGGGCAAGGCTCCTTAGGGCAT
species | Arabidopsis thaliana |
transcript | AT2G39270.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGACACTGAAGAAGTTGTCAAGGAAAGACTCAGGATTTACAACAAAATG ACTCAACCAGTGGAGGAATTCTACAAGAAACCCGGGAAGCTGTTGGAATTTEST: gi|116412543|gb|EG455135.1|EG455135
genomic: ATGACACTGAAGAAGTTGTCAAGGAAAGACTCAGGATTTACAACAAAATGgtaaaaatac ... tcgttcacagACTCAACCAGTGGAGGAATTCTACAAGAAACGCGGGAAGCTGTTGGAATTT
EST: ATGACACTGAAGAAGTTGTCAAGGAAAGACTCAGGATTTACAACAAAATG ACTCAACCAGTGGAGGAATTCTACAAGAAACGCGGGAAGCTGTTGGAATTT
genomic: ATGACACTGAAGAAGTTGTCAAGGAAAGACTCAGGATTTACAACAAAATGgtaaaaatac ... tcgttcacagACTCAACCAGTGGAGGAATTCTACAAGAAACGCGGGAAGCTGTTGGAATTT
atgattcaaattctcgtagaattaacaatgtttatatgtttttcctcgttcacagACTCAACCAGTGGAGGAATTCTACAAGAAACGCGGGAAGCTGTTGGAATTTGAATTGCCCGGTGGAATCCCAGAGTCATGGGCAAGGCTCCTTAGGGCAT
aattaac putative branch site (score: 2)
tgtttttcctcgttc putative PPT
tagaattaacaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaatacttcttcgatctttttccatgattcaaattctcgtagaattaacaatgtttatatgtttttcctcgttcacagACTCAACCAGTGGAGGAATTCTACAAGAAACGCGGGAAGCTGTTGGAATTTGAATTGCCCGGTGGAATCCCAGAGTCATGGGCAAGGCTCCTTAGGGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA