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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcttcttatctcatatactcgggctctgcggtttacttactttttgctactcaacattgacttccaatattttcaaattcatcagGTTTTGGTGTTGGACACATGCGTGATACCAAAACAAAAG

Basic information

species Arabidopsis thaliana
transcript AT2G38840.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G38840.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os07g08400.1 (Oryza sativa), 3'ss of exon 3
-----gtgc-ttcttatctcatatactcgggctctgcggtttacttactttttgctactcaacattgacttccaatattttcaaattcatcagGTTTTGGTGTTGGACACATGCGTGATACCAAAACAAAAG
      ||  ||| |  || | ||||       |   | |  |   |      | ||||    ||         |||  ||     ||  |||||||||| |||||||| ||||| ||||||||||||||||
gtacaatgagttcctgccttacatacata----ccatgctccaggaaagag--gatacttggaatgatggattgataaatt--ggctctgcagGTTTTGGAGTTGGACATATGCGAGATACCAAAACAAAAG

upper sequence: AT2G38840.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G030138_T01 (Zea mays), 3'ss of exon 3
----gtgcttcttatctcatatac-tcgggctctgcggtttacttactttttgctactcaacattgacttccaatattttcaaattcatcagGTTTTGGTGTTGGACACATGCGTGATACCAAAACAAAAG
    ||    ||||| | ||| ||  |  |||          |  ||  || | |  | ||   |   |   ||     |    | || |||||||||| |||||||||||||| ||||| ||||||||||
gtacgtcgagcttatgttataaacaccatgcttcagaaaaaccaaacacttggattttgaatggtaggtgataaataaattttctgca-cagGTTTTGGAGTTGGACACATGCGGGATACAAAAACAAAAG

upper sequence: AT2G38840.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA02G16130.1 (Glycine max), 3'ss of exon 2
------------------gtgcttcttatctcatatactcgggctctgcggtttacttactttt-tgctactcaacattgacttccaatattttcaaattcatcagGTTTTGGTGTTGGACACATGCGTGATACCAAAACAAAAG
                   |   | ||| |     |||      | |    ||   ||  | |  || |  |  | |  |  |  | | || |     ||  | ||| ||||||||||| ||||||||||| ||||| |||||||
gtgtatcttttatggctactagattttacccttattacctaaattttagaattgttttggtgtaatgttggttgaaag-gtttaacgagatatgtttttttgttagGGTTTGGTGTTGGGCACATGCGTGACACCAAGACAAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttacttactttttgctactcaacattgacttccaatattttcaaattcatcagGTTTTGGTGTTGGACACATGCGTGATACCAAAACAAAAG
                                   aatattttcaaattca  TA-rich tract