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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaatttgctttatgaatctgagttataaatttgtgtaacttgaatcagcccccttgtgattttctttatccatgagtctctattattactcatgactttgatcactaatattatggttctcattcttttgttgtagGCAAATAGTGGGCCAAACACAAATGGGTGCCAG

Basic information

species Arabidopsis thaliana
transcript AT2G38730.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164165853|gb|ES026564.1|ES026564
EST:     TGAGAATTTTACTGCTAAACATACTGGACCAGGATTGCTCTCCATG                         GCAAATAGTGGGCCAAACACAAATGGGTGCCAG
genomic: TGAGAATTTTACTGCTAAACATACTGGACCAGGATTGCTCTCCATGgtatgtaatt ... tttgttgtagGCAAATAGTGGGCCAAACACAAATGGGTGCCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attattactcatgactttgatcactaatattatggttctcattcttttgttgtagGCAAATAGTGGGCCAAACACAAATGGGTGCCAG
                     cactaat  putative branch site (score: 2)
                                   ttctcattcttttgtt  putative PPT
                   atcactaatattat  TA-rich tract