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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgttttctttaccaactattcttattccaatctacaaacgttatttacttattttatcagtagaaactcatttattttttctgtgtgtttttgaaccgcagTGGGTGGTCTATTGAACGCAACGTGTGGAAACGCGACTGAATTGATAATCGCGATTCTTGCTTTGACCAATAACAAAGTCGCAGTGGTGAAATATTCGCT

Basic information

species Arabidopsis thaliana
transcript AT2G38170.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502341|gb|HO207881.1|HO207881
EST:     GCAACTAGCTTTCTACACCGGTCCTACAT                         TGGGTGGTCTATTGAACGCAACGTGTGGAAACGCGACTGAATTGATAATCG
genomic: GCAACTAGCTTTCTACACCGGTCCTACATgtaacgtttt ... tgaaccgcagTGGGTGGTCTATTGAACGCAACGTGTGGAAACGCGACTGAATTGATAATCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttattttatcagtagaaactcatttattttttctgtgtgtttttgaaccgcagTGGGTGGTCTATTGAACGCAACGTGTGGAAACGCGACTGAATTGATAATCGCGATTCTTGCTTTGACCAATAACAAAGTCGCAGTGGTGAAATATTCGCT
                                       tgttttt  CT-rich tract
                 aaactcatttattttt  TA-rich tract